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scnpilot_dereplicated_Rhodospirillales_2

scnpilot-dereplicated_Alphaproteobacteria_69_1
In projects: scnpilot-dereplicated  |  SCNPILOT_CONT_750_BF  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 124 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_bf_scaffold_54093_curated
Species: Acidisphaera rubrifaciens (50%)
2 1129 bp 61.56 1.00 100.18
SCNpilot_cont_750_bf_scaffold_37604_curated
Species: RLO_Rhodospirillales_67_15 (50%)
2 854 bp 60.42 1.00 100.12
SCNpilot_cont_750_bf_scaffold_38338_curated
Species: Nitrospirillum amazonense (50%)
2 1625 bp 59.14 1.00 100.06
SCNpilot_cont_750_bf_scaffold_21579_curated
Species: Rhodospirillum centenum (100%)
1 1550 bp 69.10 1.00 99.87
SCNpilot_cont_750_bf_scaffold_30020_curated
Species: Microvirga aerilata (100%)
1 1268 bp 57.81 1.00 99.84
SCNpilot_cont_750_bf_scaffold_37362_curated
Species: Skermanella stibiiresistens (100%)
1 562 bp 64.23 1.00 99.82
SCNpilot_cont_750_bf_scaffold_37398_curated
Species: Caenispirillum salinarum (100%)
1 1106 bp 63.20 1.00 99.82
SCNpilot_cont_750_bf_scaffold_29723_curated
Species: Azospirillum lipoferum (50%)
2 1159 bp 61.17 1.00 97.84
SCNpilot_cont_750_bf_scaffold_910_curated
Domain: Bacteria (88.89%)
9 29691 bp 75.64 1.00 97.54
SCNpilot_cont_750_bf_scaffold_39426_curated
Species: Acetobacteraceae bacterium AT-5844 (50%)
2 1730 bp 58.79 1.00 95.38
SCNpilot_cont_750_bf_scaffold_672_curated
Class: Alphaproteobacteria (76.79%)
56 64039 bp 71.11 1.00 95.05
SCNpilot_cont_750_bf_scaffold_1281_curated
Class: Alphaproteobacteria (50%)
12 13023 bp 72.26 1.00 94.08
SCNpilot_cont_750_bf_scaffold_2710_curated 11 7218 bp 55.89 1.00 94.02
SCNpilot_cont_750_bf_scaffold_4668_curated
Order: Sphingomonadales (50%)
4 5229 bp 55.86 1.00 93.29
SCNpilot_cont_750_bf_scaffold_356_curated
Class: Alphaproteobacteria (69.05%)
42 62055 bp 72.72 1.00 92.70
SCNpilot_cont_750_bf_scaffold_414_curated
Class: Alphaproteobacteria (79.55%)
45 68943 bp 71.57 1.00 91.89
SCNpilot_cont_750_bf_scaffold_544_curated
Species: Xanthobacter autotrophicus (52%)
25 41489 bp 64.97 1.00 91.87
SCNpilot_cont_750_bf_scaffold_493_curated
Class: Alphaproteobacteria (68.89%)
45 44463 bp 67.45 1.00 91.71
SCNpilot_cont_750_bf_scaffold_1019_curated
Order: Rhodospirillales (76.92%)
14 16701 bp 68.47 1.00 91.70
SCNpilot_cont_750_bf_scaffold_710_curated
Order: Rhodospirillales (50%)
26 27537 bp 70.99 1.00 91.62
SCNpilot_cont_750_bf_scaffold_1890_curated
Phylum: Proteobacteria (50%)
14 13279 bp 57.44 1.00 91.45
SCNpilot_cont_750_bf_scaffold_10371_curated
Species: Acetobacteraceae bacterium AT-5844 (100%)
1 3199 bp 71.49 1.00 91.43
SCNpilot_cont_750_bf_scaffold_284_curated
Order: Rhodospirillales (62.05%)
166 192249 bp 69.34 1.00 91.32
SCNpilot_cont_750_bf_scaffold_1682_curated
Phylum: Proteobacteria (70.59%)
17 13167 bp 64.69 1.00 91.30
SCNpilot_cont_750_bf_scaffold_37317_curated
Species: Acidocella aminolytica (50%)
2 1046 bp 66.25 1.00 91.20
SCNpilot_cont_750_bf_scaffold_305_curated
Order: Rhodospirillales (56.92%)
66 72630 bp 69.69 1.00 90.89
SCNpilot_cont_750_bf_scaffold_488_curated
Order: Rhodospirillales (62.9%)
63 69575 bp 69.95 1.00 90.89
SCNpilot_cont_750_bf_scaffold_1492_curated
Order: Rhodospirillales (50%)
14 11172 bp 62.30 1.00 90.55
SCNpilot_cont_750_bf_scaffold_1459_curated
Class: Alphaproteobacteria (72.73%)
11 11489 bp 62.22 1.00 90.53
SCNpilot_cont_750_bf_scaffold_443_curated
Order: Rhodospirillales (70.42%)
71 76195 bp 71.39 1.00 90.53
SCNpilot_cont_750_bf_scaffold_239_curated
Class: Alphaproteobacteria (75.95%)
79 95667 bp 70.76 1.00 90.36
SCNpilot_cont_750_bf_scaffold_213_curated
Order: Rhodospirillales (64.21%)
191 197776 bp 70.31 1.00 90.33
SCNpilot_cont_750_bf_scaffold_428_curated
Class: Alphaproteobacteria (75.32%)
77 83536 bp 69.46 1.00 90.29
SCNpilot_cont_750_bf_scaffold_406_curated
Order: Rhodospirillales (63.75%)
81 88754 bp 70.68 1.00 90.28
SCNpilot_cont_750_bf_scaffold_14785_curated
Species: Roseomonas cervicalis (50%)
2 2397 bp 70.13 1.00 89.74
SCNpilot_cont_750_bf_scaffold_91_curated
Class: Alphaproteobacteria (73.48%)
181 185312 bp 69.93 1.00 89.74
SCNpilot_cont_750_bf_scaffold_188_curated
Order: Rhodospirillales (62.95%)
279 317924 bp 70.86 1.00 89.65
SCNpilot_cont_750_bf_scaffold_280_curated
Class: Alphaproteobacteria (75.14%)
187 196912 bp 71.17 1.00 89.49
SCNpilot_cont_750_bf_scaffold_1764_curated
Genus: Novosphingobium (55.56%)
9 9436 bp 64.49 1.00 89.43
SCNpilot_cont_750_bf_scaffold_105_curated
Order: Rhodospirillales (50.46%)
221 252501 bp 70.86 1.00 89.40
SCNpilot_cont_750_bf_scaffold_173_curated
Order: Rhodospirillales (52.81%)
231 245733 bp 70.19 1.00 89.38
SCNpilot_cont_750_bf_scaffold_251_curated
Order: Rhodospirillales (50%)
102 117764 bp 70.87 1.00 89.37
SCNpilot_cont_750_bf_scaffold_331_curated
Order: Rhodospirillales (60.84%)
143 151697 bp 69.92 1.00 89.32
SCNpilot_cont_750_bf_scaffold_1957_curated
Class: Alphaproteobacteria (80%)
10 8949 bp 60.84 1.00 89.31
SCNpilot_cont_750_bf_scaffold_227_curated
Order: Rhodospirillales (57.26%)
241 264469 bp 70.35 1.00 89.29
SCNpilot_cont_750_bf_scaffold_252_curated
Order: Rhodospirillales (58.14%)
87 93844 bp 70.85 1.00 89.08
SCNpilot_cont_750_bf_scaffold_911_curated
Class: Alphaproteobacteria (65.38%)
26 21717 bp 65.15 1.00 88.98
SCNpilot_cont_750_bf_scaffold_145_curated
Class: Alphaproteobacteria (73.3%)
178 213489 bp 68.92 1.00 88.90
SCNpilot_cont_750_bf_scaffold_495_curated
Order: Rhodospirillales (57.81%)
65 67814 bp 68.69 1.00 88.90
SCNpilot_cont_750_bf_scaffold_158_curated
Order: Rhodospirillales (60%)
111 140554 bp 71.29 1.00 88.90
Displaying items 1-50 of 124 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.