ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6778_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6778_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..360
DNA (360bp) protein (120aa)
Response regulator receiver protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2A1_9RHIZ
Response regulator receiver protein {ECO:0000313|EMBL:EYR80504.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two-component response regulator protein; K13589 two-component system, cell cycle response regulator CpdR
SCNpilot_expt_1000_bf_scaffold_6778_curated_trna_1
unknown

Not on your lists

456..527
DNA (72bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_6778_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(589..1371)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000374CA1A rbh
Phage integrase family protein {ECO:0000313|EMBL:CDN94817.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
integrase family protein
SCNpilot_expt_1000_bf_scaffold_6778_curated_3
unknown

Not on your lists

1456..1584
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6778_curated_4
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1581..1919)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00038160CA
excisionase
Excisionase {ECO:0000313|EMBL:CAX25985.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
SCNpilot_expt_1000_bf_scaffold_6778_curated_5
unknown

Not on your lists

comp(1916..2395)
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6778_curated_6
unknown

Not on your lists

comp(2392..2997)
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6778_curated_7
unknown

Not on your lists

4248..4436
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6778_curated_8
unknown

Not on your lists

4405..4740
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Photobacterium sp. AK15 RepID=L8JEL9_9GAMM
SCNpilot_expt_1000_bf_scaffold_6778_curated_9
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4995..5222
DNA (228bp) protein (76aa)
Uncharacterized protein {ECO:0000313|EMBL:AJY47036.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037D27F0
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6778_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5735..6235)
DNA (501bp) protein (167aa)
Phage tail tape measure protein, family {ECO:0000313|EMBL:EYR81888.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phage tail tape measure protein, TP901 family, core region n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QT20_9RHOB
SCNpilot_expt_1000_bf_scaffold_6778_curated_11
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7885..8268)
DNA (384bp) protein (128aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JWN8_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:ACM36666.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_6778_curated_12
Rhizobium phage RR1-A, Caudovirales, Viruses

Not on your lists

comp(8389..9429)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Rhizobium phage RR1-A RepID=R9TRN2_9CAUD rbh
Uncharacterized protein {ECO:0000313|EMBL:AGN34382.1}; TaxID=929833 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Rhizobium phage RR1-A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6778_curated_13
Rhizobium phage RR1-A, Caudovirales, Viruses

Not on your lists

comp(9430..9804)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhizobium phage RR1-A RepID=R9TP46_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:AGN34381.1}; TaxID=929833 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Rhizobium phage RR1-A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6778_curated_14
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9815..10549)
DNA (735bp) protein (245aa)
Peptidase S14 ClpP n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1T0_9RHIZ
Peptidase S14 ClpP {ECO:0000313|EMBL:EHS53425.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
peptidase S14, ClpP
Displaying 15 items

View Taxonomy