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SCNpilot_expt_1000_bf_scaffold_7033_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7033_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..474
DNA (474bp) protein (158aa)
TIGR02300 family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEP1_9RHIZ
TIGR02300 family protein {ECO:0000313|EMBL:EYR84131.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7033_curated_trna_1
unknown

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622..694
DNA (73bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_7033_curated_2
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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936..1163
DNA (228bp) protein (76aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J7P1_ACIMA
Uncharacterized protein {ECO:0000313|EMBL:BAJ83108.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_expt_1000_bf_scaffold_7033_curated_3
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1197..1475
DNA (279bp) protein (93aa)
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CDN49374.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Xre family transcriptional regulator
Xre family transcriptional regulator n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J7P2_ACIMA
SCNpilot_expt_1000_bf_scaffold_7033_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1774..2043)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV95_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84132.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7033_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2194..2985
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWK9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR84134.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_7033_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2989..3462)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZJ2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84135.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7033_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3653..4288
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D487_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR84136.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_7033_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4298..4717)
DNA (420bp) protein (140aa)
Transcriptional regulator Fur family protein {ECO:0000313|EMBL:EYR84137.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Fur family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00037D02BA
fur5; putative ferric uptake regulator, FUR family; K09826 Fur family transcriptional regulator, iron response regulator
SCNpilot_expt_1000_bf_scaffold_7033_curated_9
unknown

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comp(5241..5417)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7033_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5585..6808
DNA (1224bp) protein (408aa)
3-oxoacyl-[acyl-carrier-protein] synthase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7B3_9RHIZ rbh
3-oxoacyl-[acyl-carrier-protein] synthase 1 {ECO:0000313|EMBL:EYR84139.1}; EC=2.3.1.41 {ECO:0000313|EMBL:EYR84139.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fabB; 3-oxoacyl-ACP synthase; K00647 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] rbh
SCNpilot_expt_1000_bf_scaffold_7033_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6814..7620
DNA (807bp) protein (269aa)
Enoyl-[acyl-carrier-protein] reductase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2W6_9RHIZ rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
enoyl-ACP reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] rbh
SCNpilot_expt_1000_bf_scaffold_7033_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7669..7896)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYX1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84141.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_7033_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7997..9013)
DNA (1017bp) protein (339aa)
Ribosomal RNA small subunit methyltransferase C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7A9_9RHIZ rbh
Ribosomal RNA small subunit methyltransferase C {ECO:0000313|EMBL:EYR84144.1}; EC=2.1.1.172 {ECO:0000313|EMBL:EYR84144.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
methyltransferase small; K00564 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] rbh
SCNpilot_expt_1000_bf_scaffold_7033_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9107..10147)
DNA (1041bp) protein (347aa)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2W2_9RHIZ rbh
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pnpA; polynucleotide phosphorylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] rbh
Displaying 15 items

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