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SCNpilot_expt_1000_bf_scaffold_13097_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13097_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..853)
DNA (852bp) protein (284aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXR6_9RHIZ rbh
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EYR79615.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
formate dehydrogenase, alpha subunit rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(814..1395)
DNA (582bp) protein (194aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXR6_9RHIZ
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EYR79615.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
formate dehydrogenase, alpha subunit
SCNpilot_expt_1000_bf_scaffold_13097_curated_3
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1400..2956)
DNA (1557bp) protein (519aa)
Putative formate dehydrogenase beta subunit n=1 Tax=Rhizobium sp. RepID=L0NJD5_RHISP rbh
Putative formate dehydrogenase beta subunit {ECO:0000313|EMBL:CCF21193.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CCF21193.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
fdsB; NAD-dependent formate dehydrogenase subunit beta (EC:1.2.1.2) rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2953..3432)
DNA (480bp) protein (160aa)
Formate dehydrogenase protein, gamma subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ64_9RHIZ rbh
Formate dehydrogenase protein, gamma subunit {ECO:0000313|EMBL:EYR79618.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EYR79618.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADH dehydrogenase (ubiquinone) 24 kDa subunit; K00127 formate dehydrogenase, gamma subunit
SCNpilot_expt_1000_bf_scaffold_13097_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3618..4511)
DNA (894bp) protein (298aa)
Hydrogen peroxide-inducible activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ91_9RHIZ rbh
Hydrogen peroxide-inducible activator {ECO:0000313|EMBL:EYR79619.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR-type transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4614..5564
DNA (951bp) protein (317aa)
Acrylyl-CoA reductase AcuI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUP2_9RHIZ rbh
Acrylyl-CoA reductase AcuI {ECO:0000313|EMBL:EYR79620.1}; EC=1.3.1.84 {ECO:0000313|EMBL:EYR79620.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zinc-binding dehydrogenase family oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_7
unknown

Not on your lists

5504..5596
DNA (93bp) protein (31aa)
Acrylyl-CoA reductase AcuI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUP2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_13097_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5607..6377)
DNA (771bp) protein (257aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES75_9RHIZ rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EYR79621.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
short-chain type dehydrogenase/reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6514..7245
DNA (732bp) protein (244aa)
Glycerol-3-phosphate regulon repressor {ECO:0000313|EMBL:EYR79622.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glpR; DeoR family transcriptional regulator; K02444 DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor rbh
DeoR family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AQ00_RHIRD rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7359..8879
DNA (1521bp) protein (507aa)
Glycerol-3-phosphate dehydrogenase GlpD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY53_9RHIZ rbh
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glpD; protein GlpD; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8921..10003
DNA (1083bp) protein (361aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHD2_9RHIZ rbh
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:EYR79624.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EYR79624.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ATP-binding protein of sugar ABC transporter; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10014..11084
DNA (1071bp) protein (357aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXE5_9RHIZ rbh
sn-glycerol-3-phosphate import ATP-binding protein UgpC 2 {ECO:0000313|EMBL:EYR79625.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EYR79625.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_13097_curated_13
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11185..11469)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Bordetella pertussis RepID=UPI00035ECAE3
Uncharacterised protein {ECO:0000313|EMBL:CRD74912.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_13097_curated_14
unknown

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comp(11925..12077)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13097_curated_15
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12634..12846
DNA (213bp) protein (71aa)
Trehalose transport system permease protein SugB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1R8_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KEQ04128.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
ABC transporter; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_13097_curated_16
unknown

Not on your lists

comp(12922..13038)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13097_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13342..13674
DNA (333bp) protein (111aa)
Putative glycerol-3-phosphate and glycerol ABC transporter,periplasmic solute-binding component {ECO:0000313|EMBL:EYR79629.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J1TI63_9RHIZ
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
Displaying 17 items

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