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SCNpilot_expt_1000_bf_scaffold_4153_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4153_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1410)
DNA (1410bp) protein (470aa)
ATPase component of ABC transporter with duplicated ATPase domains {ECO:0000313|EMBL:EYR80793.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative ABC transporter, ATP-binding protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AI52_RHIET rbh
ABC transporter ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4153_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1817..3391)
DNA (1575bp) protein (525aa)
Putative ATPase {ECO:0000313|EMBL:EYR80792.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P0Z4_RHIML rbh
SCNpilot_expt_1000_bf_scaffold_4153_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3614..4003
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQE0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80791.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4153_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4053..4556)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZI5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80790.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4153_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4561..5715)
DNA (1155bp) protein (385aa)
Major facilitator superfamily protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUY8_9RHIZ rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EYR80789.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_4153_curated_6
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5877..6389
DNA (513bp) protein (171aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LG25_AGRSH
Uncharacterized protein {ECO:0000313|EMBL:ADY68007.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_4153_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6441..6887)
DNA (447bp) protein (149aa)
Trans-aconitate 2-methyltransferase Tam n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0Y6_9RHIZ
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tam; Trans-aconitate methyltransferase (EC:2.1.1.144); K00598 trans-aconitate 2-methyltransferase [EC:2.1.1.144]
SCNpilot_expt_1000_bf_scaffold_4153_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7159..7509)
DNA (351bp) protein (117aa)
(S)-2-haloacid dehalogenase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5K0_9RHIZ
(S)-2-haloacid dehalogenase 1 {ECO:0000313|EMBL:EYR79777.1}; EC=3.8.1.2 {ECO:0000313|EMBL:EYR79777.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
haloacid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
SCNpilot_expt_1000_bf_scaffold_4153_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7503..7796)
DNA (294bp) protein (98aa)
(S)-2-haloacid dehalogenase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5K0_9RHIZ
(S)-2-haloacid dehalogenase 1 {ECO:0000313|EMBL:EYR79777.1}; EC=3.8.1.2 {ECO:0000313|EMBL:EYR79777.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative S-2-haloacid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
SCNpilot_expt_1000_bf_scaffold_4153_curated_10
unknown

Not on your lists

8047..8361
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4153_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8211..9251)
DNA (1041bp) protein (347aa)
Alcohol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWP0_9RHIZ rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:EYR79778.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EYR79778.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
adh1; alcohol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4153_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9698..10282
DNA (585bp) protein (195aa)
Branched-chain-amino-acid aminotransferase IlvE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXN4_9RHIZ rbh
Branched-chain-amino-acid aminotransferase IlvE {ECO:0000313|EMBL:EYR79780.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EYR79780.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ilvE1; branched-chain-amino-acid aminotransferase IlvE (EC:2.6.1.42) rbh
SCNpilot_expt_1000_bf_scaffold_4153_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10588..10980)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAK0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80787.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4153_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11246..11848
DNA (603bp) protein (201aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Superoxide dismutase n=1 Tax=Rhizobium sp. CF080 RepID=J2JFX2_9RHIZ rbh
sodB1; superoxide dismutase, iron/manganese cofactor (EC:1.15.1.1) rbh
SCNpilot_expt_1000_bf_scaffold_4153_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12009..12266
DNA (258bp) protein (86aa)
Putative transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVQ5_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR80785.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
CopG family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4153_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12263..12571
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET46_9RHIZ
Plasmid stabilization system protein {ECO:0000313|EMBL:EYR80784.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
plasmid stabilization system protein
SCNpilot_expt_1000_bf_scaffold_4153_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12625..13326)
DNA (702bp) protein (234aa)
Putative transcriptional regulator {ECO:0000313|EMBL:EYR80783.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
helix-turn-helix type 11 domain-containing protein rbh
Helix-turn-helix type 11 domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIA6_RHITR rbh
SCNpilot_expt_1000_bf_scaffold_4153_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13448..14083
DNA (636bp) protein (212aa)
Leucine efflux protein Rhtb n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX18_9RHIZ rbh
Leucine efflux protein Rhtb {ECO:0000313|EMBL:EYR80782.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RhtB family transporter
SCNpilot_expt_1000_bf_scaffold_4153_curated_19
unknown

Not on your lists

comp(14052..14273)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4153_curated_20
unknown

Not on your lists

14388..14588
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4153_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14962..15405
DNA (444bp) protein (148aa)
Cytochrome c-556 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMY3_9RHIZ
Cytochrome c-556 {ECO:0000313|EMBL:EYR80781.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome c class II
SCNpilot_expt_1000_bf_scaffold_4153_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15555..16463
DNA (909bp) protein (303aa)
Diheme cytochrome c-type n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C741_9RHIZ rbh
Diheme cytochrome c-type {ECO:0000313|EMBL:EYR80780.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
diheme Cytochrome-c-type signal peptide protein rbh
SCNpilot_expt_1000_bf_scaffold_4153_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17074..17658)
DNA (585bp) protein (195aa)
ThiJ/PfpI family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPW0_9RHIZ rbh
ThiJ/PfpI family protein {ECO:0000313|EMBL:EYR80779.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ThiJ/PfpI family protein
SCNpilot_expt_1000_bf_scaffold_4153_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17675..18175)
DNA (501bp) protein (167aa)
Putative acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSE3_9RHIZ rbh
Putative acetyltransferase {ECO:0000313|EMBL:EYR80778.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_4153_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18395..18847)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX24_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80777.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4153_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18915..20591)
DNA (1677bp) protein (559aa)
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMY7_9RHIZ rbh
Lipid A export ATP-binding/permease protein MsbA {ECO:0000313|EMBL:EYR80776.1}; EC=3.6.3.- {ECO:0000313|EMBL:EYR80776.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RS04417; ABC transporter ATP-binding membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_4153_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20955..21149)
DNA (195bp) protein (65aa)
Quinoprotein glucose dehydrogenase Gdh {ECO:0000313|EMBL:EYR80775.1}; EC=1.1.5.2 {ECO:0000313|EMBL:EYR80775.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gdh; quinoprotein glucose dehydrogenase (EC:1.1.5.2)
Probabable glucose dehydrogenase (Pyrroloquinoline-quinone) protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7WZX6_SINMM
SCNpilot_expt_1000_bf_scaffold_4153_curated_28
unknown

Not on your lists

21832..22038
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying 28 items

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