name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_4153_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..1410)
|
ATPase component of ABC transporter with duplicated ATPase domains {ECO:0000313|EMBL:EYR80793.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative ABC transporter, ATP-binding protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AI52_RHIET
rbh
ABC transporter ATP-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1817..3391)
|
Putative ATPase {ECO:0000313|EMBL:EYR80792.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P0Z4_RHIML
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3614..4003
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQE0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80791.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4053..4556)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZI5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80790.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4561..5715)
|
Major facilitator superfamily protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUY8_9RHIZ
rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EYR80789.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
major facilitator superfamily protein
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_6
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5877..6389
|
hypothetical protein
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LG25_AGRSH
Uncharacterized protein {ECO:0000313|EMBL:ADY68007.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6441..6887)
|
Trans-aconitate 2-methyltransferase Tam n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0Y6_9RHIZ
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tam; Trans-aconitate methyltransferase (EC:2.1.1.144); K00598 trans-aconitate 2-methyltransferase [EC:2.1.1.144]
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7159..7509)
|
(S)-2-haloacid dehalogenase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5K0_9RHIZ
(S)-2-haloacid dehalogenase 1 {ECO:0000313|EMBL:EYR79777.1}; EC=3.8.1.2 {ECO:0000313|EMBL:EYR79777.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
haloacid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7503..7796)
|
(S)-2-haloacid dehalogenase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5K0_9RHIZ
(S)-2-haloacid dehalogenase 1 {ECO:0000313|EMBL:EYR79777.1}; EC=3.8.1.2 {ECO:0000313|EMBL:EYR79777.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative S-2-haloacid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_10
unknown
|
Not on your lists |
8047..8361
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8211..9251)
|
Alcohol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWP0_9RHIZ
rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:EYR79778.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EYR79778.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
adh1; alcohol dehydrogenase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9698..10282
|
Branched-chain-amino-acid aminotransferase IlvE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXN4_9RHIZ
rbh
Branched-chain-amino-acid aminotransferase IlvE {ECO:0000313|EMBL:EYR79780.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EYR79780.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ilvE1; branched-chain-amino-acid aminotransferase IlvE (EC:2.6.1.42)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10588..10980)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAK0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80787.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11246..11848
|
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Superoxide dismutase n=1 Tax=Rhizobium sp. CF080 RepID=J2JFX2_9RHIZ
rbh
sodB1; superoxide dismutase, iron/manganese cofactor (EC:1.15.1.1)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12009..12266
|
Putative transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVQ5_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR80785.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
CopG family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12263..12571
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET46_9RHIZ
Plasmid stabilization system protein {ECO:0000313|EMBL:EYR80784.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
plasmid stabilization system protein
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12625..13326)
|
Putative transcriptional regulator {ECO:0000313|EMBL:EYR80783.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
helix-turn-helix type 11 domain-containing protein
rbh
Helix-turn-helix type 11 domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIA6_RHITR
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13448..14083
|
Leucine efflux protein Rhtb n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX18_9RHIZ
rbh
Leucine efflux protein Rhtb {ECO:0000313|EMBL:EYR80782.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RhtB family transporter
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_19
unknown
|
Not on your lists |
comp(14052..14273)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_20
unknown
|
Not on your lists |
14388..14588
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14962..15405
|
Cytochrome c-556 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMY3_9RHIZ
Cytochrome c-556 {ECO:0000313|EMBL:EYR80781.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome c class II
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15555..16463
|
Diheme cytochrome c-type n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C741_9RHIZ
rbh
Diheme cytochrome c-type {ECO:0000313|EMBL:EYR80780.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
diheme Cytochrome-c-type signal peptide protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17074..17658)
|
ThiJ/PfpI family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPW0_9RHIZ
rbh
ThiJ/PfpI family protein {ECO:0000313|EMBL:EYR80779.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ThiJ/PfpI family protein
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17675..18175)
|
Putative acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSE3_9RHIZ
rbh
Putative acetyltransferase {ECO:0000313|EMBL:EYR80778.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18395..18847)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX24_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80777.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18915..20591)
|
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMY7_9RHIZ
rbh
Lipid A export ATP-binding/permease protein MsbA {ECO:0000313|EMBL:EYR80776.1}; EC=3.6.3.- {ECO:0000313|EMBL:EYR80776.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RS04417; ABC transporter ATP-binding membrane protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20955..21149)
|
Quinoprotein glucose dehydrogenase Gdh {ECO:0000313|EMBL:EYR80775.1}; EC=1.1.5.2 {ECO:0000313|EMBL:EYR80775.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gdh; quinoprotein glucose dehydrogenase (EC:1.1.5.2)
Probabable glucose dehydrogenase (Pyrroloquinoline-quinone) protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7WZX6_SINMM
|
|
SCNpilot_expt_1000_bf_scaffold_4153_curated_28
unknown
|
Not on your lists |
21832..22038
|
This feature has no annotations |