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SCNpilot_expt_1000_bf_scaffold_4811_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4811_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1137
DNA (1137bp) protein (379aa)
bmnA; beta-mannosidase; K01192 beta-mannosidase [EC:3.2.1.25] rbh
Beta-mannosidase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7H6_RHIFH rbh
Beta-mannosidase {ECO:0000313|EMBL:CCE96206.1}; EC=3.2.1.25 {ECO:0000313|EMBL:CCE96206.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_4811_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1153..1914
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQG2_9RHIZ rbh
Sugar phosphate isomerase/epimerase {ECO:0000313|EMBL:EYR80672.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4811_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1926..3059
DNA (1134bp) protein (378aa)
Putative dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7M6_9RHIZ rbh
Putative dehydrogenase {ECO:0000313|EMBL:EYR80673.1}; EC=1.1.99.28 {ECO:0000313|EMBL:EYR80673.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inositol 2-dehydrogenase Myo-inositol 2-dehydrogenase; MI 2-dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4811_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3252..4283
DNA (1032bp) protein (344aa)
L-glyceraldehyde 3-phosphate reductase Gpr n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPP7_9RHIZ rbh
L-glyceraldehyde 3-phosphate reductase Gpr {ECO:0000313|EMBL:EYR82291.1}; EC=1.1.1.- {ECO:0000313|EMBL:EYR82291.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase, aldo/keto reductase family rbh
SCNpilot_expt_1000_bf_scaffold_4811_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4290..5324)
DNA (1035bp) protein (345aa)
High-affinity zinc uptake system protein ZnuA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERP3_9RHIZ rbh
High-affinity zinc uptake system protein ZnuA {ECO:0000313|EMBL:EYR82289.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
znuA; high-affinity zinc uptake system protein ZnuA precursor; K09815 zinc transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4811_curated_6
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5377..6228)
DNA (852bp) protein (284aa)
Glucose-binding protein n=1 Tax=Pseudomonas putida RepID=Q9Z422_PSEPU
Glucose-binding protein {ECO:0000313|EMBL:AAD00241.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
SCNpilot_expt_1000_bf_scaffold_4811_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6437..7051
DNA (615bp) protein (205aa)
High-affinity zinc uptake system membrane protein ZnuB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYS9_9RHIZ
High-affinity zinc uptake system membrane protein ZnuB {ECO:0000313|EMBL:EYR82287.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-3 protein; K09816 zinc transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4811_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6994..7170
DNA (177bp) protein (59aa)
High-affinity zinc uptake system membrane protein ZnuB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYS9_9RHIZ
High-affinity zinc uptake system membrane protein ZnuB {ECO:0000313|EMBL:EYR82287.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
znuB; zinc ABC transporter permease; K09816 zinc transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4811_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7167..7574
DNA (408bp) protein (136aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPQ1_9RHIZ
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EYR82286.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zur; zinc uptake transcriptional regulator protein; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_expt_1000_bf_scaffold_4811_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7635..8165)
DNA (531bp) protein (177aa)
Ferripyochelin binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERP8_9RHIZ rbh
Ferripyochelin binding protein {ECO:0000313|EMBL:EYR82284.1}; EC=2.3.1.- {ECO:0000313|EMBL:EYR82284.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative acetyltransferase
SCNpilot_expt_1000_bf_scaffold_4811_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8270..9355
DNA (1086bp) protein (362aa)
tRNA-dihydrouridine synthase A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU78_9RHIZ rbh
tRNA-dihydrouridine synthase A {ECO:0000313|EMBL:EYR82283.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR82283.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tRNA-dihydrouridine synthase A; K05539 tRNA-dihydrouridine synthase A [EC:1.-.-.-] rbh
SCNpilot_expt_1000_bf_scaffold_4811_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9519..10112
DNA (594bp) protein (198aa)
DnaJ family molecular chaperone n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYT4_9RHIZ rbh
DnaJ family molecular chaperone {ECO:0000313|EMBL:EYR82282.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaJ; DnaJ family molecular chaperone rbh
SCNpilot_expt_1000_bf_scaffold_4811_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10426..12000)
DNA (1575bp) protein (525aa)
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
UvrABC system protein B (Fragment) n=1 Tax=Rhizobium sp. CF122 RepID=J3BUY1_9RHIZ rbh
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B rbh
Displaying 13 items

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