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CN-SCN_Pseudonocardia_51x

CN-SCN_Pseudonocardia_dioxanivorans_72_52
In projects: CN-SCN

Consensus taxonomy: Pseudonocardia dioxanivorans  →  Pseudonocardia  →  Pseudonocardiales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 52.07 Longest contig: 137.81 Kbp Bin length: 5.47 Mbp GC content: 72.42 %
Contigs count: 408 Features count: 5682 rRNAs count: 0 tRNAs count: 37

Genome completeness

partial RP 9 / 55 MC: 1 BSCG 8 / 51 MC: 1 ASCG 4 / 38

Description

Partial 9

Displaying items 51-100 of 408 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4494 PSE51_76
Species: Pseudonocardia dioxanivorans (80%)
20 18422 bp 74.07 55.61 94.00
cn_combo_scaffold_10860 PSE51_268
Species: Pseudonocardia dioxanivorans (83.33%)
6 5835 bp 74.38 55.60 94.09
cn_combo_scaffold_4310 PSE51_72
Species: Pseudonocardia dioxanivorans (57.14%)
14 14063 bp 72.95 55.57 91.88
cn_combo_scaffold_12157 PSE51_317
Order: Corynebacteriales (66.67%)
6 5250 bp 72.84 55.56 95.83
cn_combo_scaffold_6679 PSE51_151
Species: Pseudonocardia dioxanivorans (71.43%)
7 9113 bp 72.27 55.55 92.60
cn_combo_scaffold_7282 PSE51_173
Species: Pseudonocardia dioxanivorans (77.78%)
9 8415 bp 72.26 55.46 91.30
cn_combo_scaffold_7823 PSE51_177
Species: Pseudonocardia dioxanivorans (83.33%)
12 7911 bp 71.80 55.40 85.51
cn_combo_scaffold_6389 PSE51_393
Class: Actinobacteria (84.62%)
13 9458 bp 73.30 55.38 83.07
cn_combo_scaffold_10629 PSE51_260
Species: Pseudonocardia dioxanivorans (83.33%)
6 5963 bp 72.04 55.34 80.80
cn_combo_scaffold_7937 PSE51_182
Species: Pseudonocardia dioxanivorans (83.33%)
6 7809 bp 72.76 55.31 90.43
cn_combo_scaffold_6814 PSE51_155
Species: Pseudonocardia dioxanivorans (73.33%)
15 14047 bp 70.50 55.29 89.91
cn_combo_scaffold_12476 PSE51_328
Species: Pseudonocardia dioxanivorans (87.5%)
8 6589 bp 72.38 55.27 88.83
cn_combo_scaffold_12975 PSE51_347
Species: Pseudonocardia dioxanivorans (100%)
6 8320 bp 73.31 55.26 94.04
cn_combo_scaffold_5477 PSE51_108
Species: Pseudonocardia dioxanivorans (100%)
12 10851 bp 72.89 55.12 95.52
cn_combo_scaffold_8411 PSE51_192
Species: Pseudonocardia dioxanivorans (85.71%)
7 7422 bp 73.73 55.08 84.32
cn_combo_scaffold_737 PSE51_378
Class: Actinobacteria (80.28%)
71 75271 bp 70.52 55.01 92.27
cn_combo_scaffold_7834 PSE51_396
Class: Actinobacteria (50%)
8 7906 bp 71.96 55.00 94.33
cn_combo_scaffold_9693 PSE51_236
Species: Pseudonocardia dioxanivorans (50%)
6 7004 bp 73.66 55.00 89.99
cn_combo_scaffold_3292 PSE51_45
Species: Pseudonocardia dioxanivorans (61.54%)
13 17384 bp 73.36 54.97 96.05
cn_combo_scaffold_4911 PSE51_388
Class: Actinobacteria (57.14%)
14 11972 bp 71.58 54.91 96.48
cn_combo_scaffold_18575 PSE51_369
Species: Pseudonocardia dioxanivorans (85.71%)
7 5207 bp 72.00 54.91 84.52
cn_combo_scaffold_8460 PSE51_194
Species: Pseudonocardia dioxanivorans (100%)
10 9968 bp 73.66 54.90 95.80
cn_combo_scaffold_21229 PSE51_375
Species: Pseudonocardia dioxanivorans (100%)
6 5400 bp 73.13 54.87 88.39
cn_combo_scaffold_9773 PSE51_239
Species: Pseudonocardia dioxanivorans (100%)
8 6455 bp 72.89 54.86 87.75
cn_combo_scaffold_12325 PSE51_322
Species: Pseudonocardia dioxanivorans (100%)
6 5187 bp 73.57 54.85 96.24
cn_combo_scaffold_8837 PSE51_206
Order: Pseudonocardiales (66.67%)
9 7120 bp 69.37 54.83 82.79
cn_combo_scaffold_5080 PSE51_95
Species: Pseudonocardia dioxanivorans (80%)
15 11604 bp 73.45 54.80 91.24
cn_combo_scaffold_11861 PSE51_304
Species: Pseudonocardia dioxanivorans (100%)
5 5373 bp 70.78 54.79 90.51
cn_combo_scaffold_5931 PSE51_128
Species: Pseudonocardia dioxanivorans (64.29%)
14 10099 bp 72.21 54.76 89.09
cn_combo_scaffold_4260 PSE51_387
Class: Actinobacteria (75%)
12 14064 bp 74.63 54.74 96.61
cn_combo_scaffold_6666 PSE51_150
Class: Actinobacteria (88.89%)
9 9120 bp 69.08 54.69 97.86
cn_combo_scaffold_9292 PSE51_223
Species: Pseudonocardia dioxanivorans (50%)
6 6757 bp 71.30 54.68 90.75
cn_combo_scaffold_1103 PSE51_8
Order: Pseudonocardiales (55.7%)
79 82451 bp 71.69 54.65 93.05
cn_combo_scaffold_5867 PSE51_125
Species: Pseudonocardia dioxanivorans (63.64%)
11 10191 bp 71.78 54.65 80.48
cn_combo_scaffold_3014 PSE51_36
Species: Pseudonocardia dioxanivorans (90.32%)
31 28951 bp 73.08 54.64 94.51
cn_combo_scaffold_12626 PSE51_336
Species: Pseudonocardia dioxanivorans (85.71%)
7 5921 bp 71.42 54.64 86.94
cn_combo_scaffold_9005 PSE51_211
Species: Pseudonocardia dioxanivorans (87.5%)
8 7644 bp 72.72 54.62 93.60
cn_combo_scaffold_9054 PSE51_213
Species: Pseudonocardia dioxanivorans (90%)
10 6949 bp 74.01 54.53 93.16
cn_combo_scaffold_9284 PSE51_222
Class: Actinobacteria (76.92%)
13 10587 bp 71.51 54.49 90.18
cn_combo_scaffold_5168 PSE51_99
Species: Pseudonocardia dioxanivorans (76.47%)
17 13294 bp 72.59 54.48 92.16
cn_combo_scaffold_7985 PSE51_183
Species: Pseudonocardia dioxanivorans (76.92%)
13 12522 bp 73.21 54.47 91.93
cn_combo_scaffold_12312 PSE51_321
Species: Pseudonocardia dioxanivorans (100%)
5 5191 bp 75.53 54.44 84.15
cn_combo_scaffold_2017 PSE51_15
Species: Pseudonocardia dioxanivorans (89.29%)
28 36154 bp 72.55 54.41 93.52
cn_combo_scaffold_3272 PSE51_44
Species: Pseudonocardia dioxanivorans (100%)
20 17462 bp 73.53 54.40 94.22
cn_combo_scaffold_12115 PSE51_315
Species: Pseudonocardia dioxanivorans (100%)
6 5263 bp 73.53 54.38 96.10
cn_combo_scaffold_3723 PSE51_53
Species: Pseudonocardia dioxanivorans (66.67%)
21 21233 bp 72.90 54.37 88.45
cn_combo_scaffold_1941 PSE51_13
Species: Pseudonocardia dioxanivorans (92.31%)
26 28049 bp 73.10 54.35 89.18
cn_combo_scaffold_12535 PSE51_332
Species: Pseudonocardia dioxanivorans (92.31%)
13 10092 bp 71.93 54.35 82.49
cn_combo_scaffold_8659 PSE51_200
Species: Pseudonocardia dioxanivorans (50%)
6 7241 bp 73.44 54.30 88.87
cn_combo_scaffold_9640 PSE51_235
Species: Pseudonocardia dioxanivorans (100%)
7 6528 bp 71.49 54.30 93.15
Displaying items 51-100 of 408 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.