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CN-SCN_Pseudonocardia_86x

CN-SCN_Pseudonocardia_dioxanivorans_72_87
In projects: CN-SCN

Consensus taxonomy: Pseudonocardia dioxanivorans  →  Pseudonocardia  →  Pseudonocardiales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 86.84 Longest contig: 218.34 Kbp Bin length: 6.55 Mbp GC content: 72.03 %
Contigs count: 396 Features count: 6738 rRNAs count: 0 tRNAs count: 41

Genome completeness

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1

Description

Partial 14

Displaying items 101-150 of 396 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_5414 PSE87_100
Species: Pseudonocardia dioxanivorans (54.55%)
11 11596 bp 73.25 89.95 96.40
cn_combo_scaffold_10195 PSE87_228
Species: Pseudonocardia dioxanivorans (87.5%)
8 6796 bp 73.19 89.94 94.25
cn_combo_scaffold_11854 PSE87_268
Species: Pseudonocardia dioxanivorans (85.71%)
7 7379 bp 71.46 89.92 74.85
cn_combo_scaffold_9480 PSE87_209
Species: Pseudonocardia dioxanivorans (78.26%)
23 20650 bp 72.62 89.88 90.31
cn_combo_scaffold_11134 PSE87_253
Species: Pseudonocardia dioxanivorans (100%)
7 5709 bp 72.64 89.86 83.76
cn_combo_scaffold_1542 PSE87_7
Class: Actinobacteria (84.62%)
26 33419 bp 71.69 89.80 90.93
cn_combo_scaffold_12828 PSE87_294
Species: Pseudonocardia dioxanivorans (100%)
8 7250 bp 71.66 89.79 82.01
cn_combo_scaffold_14267 PSE87_307
Species: Pseudonocardia dioxanivorans (100%)
8 6307 bp 73.92 89.77 92.47
cn_combo_scaffold_15320 PSE87_399
Class: Actinobacteria (88.89%)
9 7797 bp 72.62 89.74 92.92
cn_combo_scaffold_4828 PSE87_382
Class: Actinobacteria (54.55%)
11 12803 bp 72.63 89.72 92.42
cn_combo_scaffold_15352 PSE87_318
Species: Pseudonocardia dioxanivorans (83.33%)
6 6164 bp 69.95 89.71 88.72
cn_combo_scaffold_10425 PSE87_234
Species: Pseudonocardia dioxanivorans (100%)
3 6077 bp 73.44 89.68 93.20
cn_combo_scaffold_13889 PSE87_303
Species: Pseudonocardia dioxanivorans (72.73%)
11 9395 bp 72.66 89.63 84.33
cn_combo_scaffold_6623 PSE87_136
Species: Pseudonocardia dioxanivorans (100%)
9 9158 bp 73.33 89.62 89.23
cn_combo_scaffold_21176 PSE87_343b
Species: Pseudonocardia dioxanivorans (100%)
5 5529 bp 71.71 89.58 97.23
cn_combo_scaffold_8482 PSE87_183
Species: Pseudonocardia dioxanivorans (52.94%)
17 14527 bp 71.79 89.57 86.36
cn_combo_scaffold_7409 PSE87_162
Species: Pseudonocardia dioxanivorans (75%)
12 10176 bp 72.21 89.49 88.21
cn_combo_scaffold_3933 PSE87_54
Species: Pseudonocardia dioxanivorans (92.86%)
14 14814 bp 73.38 89.42 86.21
cn_combo_scaffold_2774 PSE87_25
Species: Pseudonocardia dioxanivorans (79.17%)
24 25190 bp 72.77 89.39 89.86
cn_combo_scaffold_9177 PSE87_200
Species: Pseudonocardia dioxanivorans (85.71%)
14 13121 bp 73.42 89.38 93.99
cn_combo_scaffold_2232 PSE87_17
Species: Pseudonocardia dioxanivorans (53.66%)
41 38673 bp 72.74 89.37 88.10
cn_combo_scaffold_3111 PSE87_30
Species: Pseudonocardia dioxanivorans (73.68%)
19 19531 bp 73.40 89.36 83.88
cn_combo_scaffold_2098 PSE87_12
Species: Pseudonocardia dioxanivorans (59.09%)
22 26113 bp 67.41 89.33 75.87
cn_combo_scaffold_10336 PSE87_232
Species: Pseudonocardia dioxanivorans (76.47%)
17 16641 bp 73.22 89.32 86.44
cn_combo_scaffold_53 PSE87_341a
Class: Actinobacteria (86.29%)
197 218343 bp 70.77 89.30 91.64
cn_combo_scaffold_9461 PSE87_207
Species: Pseudonocardia dioxanivorans (100%)
11 12406 bp 71.98 89.30 89.33
cn_combo_scaffold_9135 PSE87_198
Species: Pseudonocardia dioxanivorans (100%)
8 6884 bp 73.40 89.26 90.95
cn_combo_scaffold_1172 PSE87_353
Class: Actinobacteria (57.5%)
40 44088 bp 69.03 89.23 77.99
cn_combo_scaffold_3559 PSE87_46
Species: Pseudonocardia dioxanivorans (80.77%)
26 26818 bp 72.40 89.20 91.07
cn_combo_scaffold_10594 PSE87_239
Species: Pseudonocardia dioxanivorans (100%)
5 5980 bp 71.91 89.20 61.91
cn_combo_scaffold_8847 PSE87_187
Species: Pseudonocardia dioxanivorans (100%)
8 7107 bp 72.49 89.19 91.01
cn_combo_scaffold_12114 PSE87_275
Species: Pseudonocardia dioxanivorans (80%)
5 5263 bp 73.06 89.15 97.36
cn_combo_scaffold_3489 PSE87_43
Species: Pseudonocardia dioxanivorans (84%)
25 31208 bp 72.74 89.14 91.29
cn_combo_scaffold_10283 PSE87_230
Species: Pseudonocardia dioxanivorans (76.92%)
13 13202 bp 72.75 89.13 88.27
cn_combo_scaffold_6503 PSE87_132
Species: Pseudonocardia dioxanivorans (62.5%)
8 9303 bp 73.26 89.10 92.29
cn_combo_scaffold_392 PSE87_344
Class: Actinobacteria (75.27%)
93 90878 bp 72.09 89.04 90.99
cn_combo_scaffold_9341 PSE87_205
Species: Pseudonocardia dioxanivorans (100%)
9 8604 bp 73.71 89.01 95.61
cn_combo_scaffold_6880 PSE87_144
Species: Pseudonocardia dioxanivorans (72.73%)
11 8857 bp 72.50 88.99 97.48
cn_combo_scaffold_10703 PSE87_245
Species: Pseudonocardia dioxanivorans (87.5%)
8 5920 bp 73.16 88.92 87.16
cn_combo_scaffold_12390 PSE87_282
Species: Pseudonocardia dioxanivorans (69.23%)
13 8078 bp 72.02 88.91 88.13
cn_combo_scaffold_10850 PSE87_246
Class: Actinobacteria (77.78%)
9 5845 bp 71.21 88.91 87.08
cn_combo_scaffold_12569 PSE87_289
Species: Pseudonocardia dioxanivorans (100%)
8 7679 bp 73.77 88.90 96.93
cn_combo_scaffold_3438 PSE87_40
Species: Pseudonocardia dioxanivorans (71.43%)
28 23858 bp 72.18 88.89 85.48
cn_combo_scaffold_5776 PSE87_111
Species: Pseudonocardia dioxanivorans (81.82%)
11 10347 bp 71.71 88.88 90.66
cn_combo_scaffold_616 PSE87_2
Class: Actinobacteria (73.24%)
71 66698 bp 71.68 88.85 90.30
cn_combo_scaffold_12583 PSE87_290
Species: Pseudonocardia dioxanivorans (100%)
8 6646 bp 73.31 88.84 91.59
cn_combo_scaffold_11173 PSE87_255
Species: Pseudonocardia dioxanivorans (75%)
4 5690 bp 74.50 88.80 98.38
cn_combo_scaffold_987 PSE87_350
Class: Actinobacteria (79.63%)
54 49130 bp 68.03 88.75 81.43
Duplicated contig (similar to ACT75_33). Contains SCN hydrolase. Rose Kantor (9/26/13)
cn_combo_scaffold_2410 PSE87_20
Species: Pseudonocardia dioxanivorans (53.33%)
30 24446 bp 72.42 88.72 90.47
cn_combo_scaffold_5593 PSE87_107
Species: Pseudonocardia dioxanivorans (54.55%)
11 10667 bp 73.02 88.72 90.70
Displaying items 101-150 of 396 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.