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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 201-250 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_8095 XAN48_158
Order: Xanthomonadales (77.78%)
9 7683 bp 68.85 49.26 91.64
cn_combo_scaffold_5592 XAN48_88
Order: Xanthomonadales (75%)
20 14809 bp 70.36 49.23 94.92
cn_combo_scaffold_16380 XAN48_330
Genus: Lysobacter (50%)
6 6044 bp 69.57 49.22 95.70
cn_combo_scaffold_19742 XAN48_336
Genus: Lysobacter (71.43%)
7 6265 bp 68.95 49.21 97.21
cn_combo_scaffold_10862 XAN48_240
Order: Xanthomonadales (100%)
5 5834 bp 68.03 49.18 98.58
cn_combo_scaffold_2992 XAN48_20
Order: Xanthomonadales (90%)
10 18904 bp 71.97 49.15 93.15
cn_combo_scaffold_4628 XAN48_59
Genus: Lysobacter (57.14%)
7 12711 bp 70.10 49.08 96.08
cn_combo_scaffold_9878 XAN48_210
Order: Xanthomonadales (88.89%)
9 7697 bp 71.96 49.07 85.20
cn_combo_scaffold_7693 XAN48_147
Order: Xanthomonadales (75%)
8 8017 bp 71.19 49.07 85.17
cn_combo_scaffold_11902 XAN48_278
Genus: Lysobacter (50%)
8 5355 bp 69.80 48.91 92.38
cn_combo_scaffold_7144 XAN48_131
Order: Xanthomonadales (76.92%)
13 15603 bp 70.86 48.90 93.37
cn_combo_scaffold_1420 XAN48_3
Order: Xanthomonadales (78.05%)
41 36368 bp 69.21 48.78 90.62
cn_combo_scaffold_2171 XAN48_10
Order: Xanthomonadales (80.77%)
26 25155 bp 69.70 48.78 94.44
cn_combo_scaffold_11847 XAN48_275
Order: Xanthomonadales (71.43%)
7 5381 bp 70.47 48.75 91.82
cn_combo_scaffold_3875 XAN48_39
Genus: Lysobacter (50%)
14 14980 bp 68.52 48.71 93.48
cn_combo_scaffold_8201 XAN48_162
Genus: Lysobacter (53.33%)
15 12723 bp 71.52 48.71 95.26
cn_combo_scaffold_7721 XAN48_150
Genus: Lysobacter (50%)
12 12903 bp 71.21 48.70 94.95
cn_combo_scaffold_4090 XAN48_46
Order: Xanthomonadales (81.82%)
11 14328 bp 66.49 48.69 92.61
cn_combo_scaffold_9958 XAN48_212
Order: Xanthomonadales (66.67%)
6 6341 bp 68.63 48.67 87.95
cn_combo_scaffold_2692 XAN48_15
Genus: Lysobacter (57.89%)
19 20837 bp 68.33 48.66 94.00
cn_combo_scaffold_6073 XAN48_106
Order: Xanthomonadales (70%)
10 9904 bp 68.88 48.64 95.78
cn_combo_scaffold_11422 XAN48_257
Genus: Lysobacter (77.78%)
9 5575 bp 68.59 48.61 95.03
cn_combo_scaffold_8307 XAN48_165
Genus: Lysobacter (53.85%)
13 10570 bp 72.41 48.61 98.71
cn_combo_scaffold_8098 XAN48_157
Order: Xanthomonadales (66.67%)
9 7680 bp 70.51 48.59 87.23
cn_combo_scaffold_3080 XAN48_25
Genus: Lysobacter (52.38%)
21 20984 bp 70.72 48.58 93.26
cn_combo_scaffold_9118 XAN48_181
Order: Xanthomonadales (55.56%)
9 6898 bp 68.85 48.52 90.27
cn_combo_scaffold_8836 XAN48_178
Order: Xanthomonadales (81.82%)
11 15144 bp 71.33 48.49 96.85
cn_combo_scaffold_3066 XAN48_23
Genus: Lysobacter (50%)
22 18528 bp 72.45 48.48 95.25
cn_combo_scaffold_12002 XAN48_284
Order: Xanthomonadales (60%)
5 5312 bp 69.63 48.48 91.94
cn_combo_scaffold_7356 XAN48_137
Genus: Lysobacter (57.14%)
7 8669 bp 68.96 48.45 87.83
cn_combo_scaffold_8253 XAN48_164
Genus: Lysobacter (60%)
10 7555 bp 69.16 48.44 95.02
cn_combo_scaffold_7222 XAN48_132
Order: Xanthomonadales (66.67%)
9 9302 bp 67.28 48.40 84.69
cn_combo_scaffold_1607 XAN48_4
Order: Xanthomonadales (76%)
25 33192 bp 66.40 48.39 93.68
cn_combo_scaffold_12137 XAN48_288
Order: Xanthomonadales (66.67%)
6 5257 bp 71.89 48.39 96.04
cn_combo_scaffold_14074 XAN48_318
Order: Xanthomonadales (85.71%)
7 7365 bp 68.59 48.39 93.77
cn_combo_scaffold_11565 XAN48_262
Genus: Lysobacter (66.67%)
6 5504 bp 68.24 48.38 93.15
cn_combo_scaffold_9136 XAN48_183
Genus: Lysobacter (75%)
8 6884 bp 67.56 48.33 92.21
cn_combo_scaffold_5606 XAN48_89
Order: Xanthomonadales (61.54%)
13 10634 bp 70.27 48.28 87.31
cn_combo_scaffold_8101 XAN48_159
Order: Xanthomonadales (62.5%)
8 7675 bp 71.01 48.27 96.66
cn_combo_scaffold_12570 XAN48_300
Genus: Lysobacter (62.5%)
8 5096 bp 68.01 48.25 94.66
cn_combo_scaffold_11817 XAN48_273
Genus: Lysobacter (50%)
8 7043 bp 70.17 48.22 93.03
cn_combo_scaffold_5362 XAN48_82
Order: Xanthomonadales (58.33%)
12 11040 bp 69.84 48.19 98.26
cn_combo_scaffold_5460 XAN48_84
Genus: Lysobacter (50%)
12 10882 bp 71.49 48.19 96.49
cn_combo_scaffold_14243 XAN48_321
Genus: Lysobacter (66.67%)
9 8012 bp 69.43 48.17 93.65
cn_combo_scaffold_5882 XAN48_96
Genus: Lysobacter (66.67%)
6 10177 bp 71.16 48.17 97.34
cn_combo_scaffold_8105 XAN48_160
Genus: Lysobacter (62.5%)
8 7670 bp 69.56 48.15 93.95
cn_combo_scaffold_10831 XAN48_238
Order: Xanthomonadales (70%)
10 9970 bp 72.58 48.09 90.69
cn_combo_scaffold_3227 XAN48_32
Order: Xanthomonadales (88.89%)
36 34742 bp 67.20 48.07 91.43
cn_combo_scaffold_5494 XAN48_85
Genus: Lysobacter (58.33%)
12 10819 bp 69.68 48.05 91.53
cn_combo_scaffold_9613 XAN48_202
Order: Xanthomonadales (60%)
5 7030 bp 68.69 48.01 91.37
Displaying items 201-250 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.