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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 51-100 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4301 XAN48_52
Genus: Arenimonas (54.55%)
11 13609 bp 69.89 53.88 94.83
cn_combo_scaffold_14041 XAN48_317
Order: Xanthomonadales (71.43%)
7 7391 bp 69.41 53.86 91.37
cn_combo_scaffold_13703 XAN48_313
Species: Pseudoxanthomonas suwonensis (50%)
8 7808 bp 68.78 53.75 91.66
cn_combo_scaffold_8682 XAN48_174
Order: Xanthomonadales (85.71%)
7 9384 bp 69.46 53.75 95.14
cn_combo_scaffold_12194 XAN48_292
Order: Xanthomonadales (80%)
5 5236 bp 68.85 53.71 83.54
cn_combo_scaffold_7241 XAN48_133
Order: Xanthomonadales (70%)
10 8457 bp 69.63 53.66 87.12
cn_combo_scaffold_6708 XAN48_123
Genus: Lysobacter (55.56%)
9 9073 bp 70.20 53.52 94.90
cn_combo_scaffold_11616 XAN48_263
Genus: Xanthomonas (57.14%)
7 5482 bp 69.99 53.50 90.02
cn_combo_scaffold_3919 XAN48_41
Genus: Lysobacter (71.43%)
14 16017 bp 69.66 53.50 91.03
cn_combo_scaffold_9570 XAN48_201
Genus: Lysobacter (57.14%)
7 6576 bp 70.26 53.50 97.13
cn_combo_scaffold_2690 XAN48_14
Order: Xanthomonadales (87.5%)
16 20876 bp 70.04 53.44 95.56
cn_combo_scaffold_5230 XAN48_342a
Order: Xanthomonadales (53.33%)
15 11272 bp 69.42 53.42 87.85
cn_combo_scaffold_4198 XAN48_50
Genus: Lysobacter (53.33%)
15 13927 bp 71.98 53.42 95.28
cn_combo_scaffold_9501 XAN48_198
Order: Xanthomonadales (77.78%)
9 6624 bp 70.94 53.41 92.07
cn_combo_scaffold_13722 XAN48_315
Order: Xanthomonadales (57.14%)
7 5428 bp 69.73 53.39 82.41
cn_combo_scaffold_11455 XAN48_258
Genus: Xanthomonas (50%)
6 5558 bp 69.59 53.36 96.51
cn_combo_scaffold_5145 XAN48_76
Species: Hydrocarboniphaga effusa (57.14%)
7 11460 bp 69.73 53.16 95.24
cn_combo_scaffold_14729 XAN48_325
Genus: Lysobacter (70%)
10 7284 bp 70.54 53.12 95.22
cn_combo_scaffold_6903 XAN48_127
Order: Xanthomonadales (76.92%)
13 15928 bp 71.75 53.06 92.00
cn_combo_scaffold_5971 XAN48_100
Genus: Lysobacter (61.54%)
13 11647 bp 71.42 53.03 93.04
cn_combo_scaffold_10926 XAN48_242
Order: Xanthomonadales (71.43%)
7 5802 bp 68.84 52.91 86.45
cn_combo_scaffold_6868 XAN48_126
Genus: Lysobacter (63.64%)
11 12574 bp 69.44 52.90 96.84
cn_combo_scaffold_5603 XAN48_90
Order: Xanthomonadales (57.89%)
19 12104 bp 70.33 52.78 94.11
cn_combo_scaffold_4927 XAN48_65
Order: Xanthomonadales (76.92%)
13 11924 bp 71.69 52.76 98.80
cn_combo_scaffold_7997 XAN48_154
Genus: Lysobacter (50%)
10 7765 bp 67.11 52.76 88.05
cn_combo_scaffold_7449 XAN48_139
Genus: Lysobacter (55.56%)
9 8666 bp 71.00 52.73 90.56
cn_combo_scaffold_8118 XAN48_161
Genus: Lysobacter (62.5%)
8 7660 bp 69.77 52.73 95.09
cn_combo_scaffold_5136 XAN48_75
Order: Xanthomonadales (57.14%)
14 11985 bp 67.48 52.72 90.89
cn_combo_scaffold_2844 XAN48_19
Genus: Lysobacter (58.33%)
12 19809 bp 72.24 52.63 97.03
cn_combo_scaffold_11786 XAN48_344
Order: Xanthomonadales (50%)
6 7150 bp 67.09 52.56 87.19
cn_combo_scaffold_23348 XAN48_342b
Order: Xanthomonadales (71.43%)
7 5076 bp 69.41 52.40 88.71
cn_combo_scaffold_1845 XAN48_6
Order: Xanthomonadales (84%)
25 29369 bp 65.40 52.36 95.98
cn_combo_scaffold_16130 XAN48_327
Order: Xanthomonadales (80%)
5 7360 bp 63.23 52.30 74.76
cn_combo_scaffold_3189 XAN48_29
Genus: Lysobacter (70.59%)
17 17886 bp 72.65 52.25 95.49
cn_combo_scaffold_2163 XAN48_9
Order: Xanthomonadales (76%)
25 25248 bp 70.45 52.18 92.82
cn_combo_scaffold_8485 XAN48_166
Order: Xanthomonadales (77.78%)
9 7881 bp 69.20 52.13 81.42
cn_combo_scaffold_11379 XAN48_255
Species: Lysobacter concretionis (50%)
6 5593 bp 67.55 52.10 89.52
cn_combo_scaffold_5885 XAN48_97
Genus: Lysobacter (50%)
6 10172 bp 72.29 52.10 97.36
cn_combo_scaffold_11368 XAN48_253
Genus: Lysobacter (57.14%)
7 5596 bp 70.98 52.06 96.12
cn_combo_scaffold_5026 XAN48_69
Genus: Pseudoxanthomonas (54.55%)
11 11704 bp 69.53 52.06 94.48
cn_combo_scaffold_8825 XAN48_176
Genus: Lysobacter (58.33%)
12 9116 bp 70.15 52.05 96.19
cn_combo_scaffold_9559 XAN48_200
Genus: Lysobacter (62.5%)
8 7569 bp 70.80 52.05 96.79
cn_combo_scaffold_11905 XAN48_279
Genus: Lysobacter (60%)
15 10291 bp 68.95 52.02 88.88
cn_combo_scaffold_9230 XAN48_189
Order: Xanthomonadales (84.21%)
19 14597 bp 70.24 51.96 90.61
cn_combo_scaffold_4290 XAN48_51
Order: Xanthomonadales (73.68%)
19 13656 bp 68.63 51.93 90.38
cn_combo_scaffold_13621 XAN48_312
Genus: Lysobacter (63.64%)
11 9489 bp 72.71 51.91 99.94
cn_combo_scaffold_5692 XAN48_93
Order: Xanthomonadales (78.57%)
14 10488 bp 69.77 51.87 94.08
cn_combo_scaffold_6394 XAN48_117
Order: Xanthomonadales (75%)
8 10581 bp 69.28 51.87 93.22
cn_combo_scaffold_12757 XAN48_305
Species: Lysobacter arseniciresistens (75%)
8 6941 bp 70.47 51.84 98.63
cn_combo_scaffold_8672 XAN48_173
Genus: Lysobacter (66.67%)
9 10761 bp 68.55 51.83 90.80
Displaying items 51-100 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.