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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 151-200 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_11970 XAN48_282
Genus: Lysobacter (60%)
5 5324 bp 71.86 50.54 94.44
cn_combo_scaffold_9142 XAN48_184
Order: Xanthomonadales (62.5%)
8 6880 bp 68.87 50.54 88.74
cn_combo_scaffold_3714 XAN48_35
Genus: Lysobacter (64.71%)
17 18128 bp 71.61 50.51 95.97
cn_combo_scaffold_9869 XAN48_208
Class: Gammaproteobacteria (71.43%)
7 6399 bp 68.15 50.49 92.59
cn_combo_scaffold_7688 XAN48_146
Genus: Lysobacter (62.5%)
8 8021 bp 70.48 50.44 94.74
cn_combo_scaffold_3015 XAN48_21
Order: Xanthomonadales (57.14%)
21 18787 bp 65.97 50.43 89.28
cn_combo_scaffold_5730 XAN48_94
Order: Xanthomonadales (66.67%)
12 12899 bp 71.37 50.42 94.64
cn_combo_scaffold_8540 XAN48_168
Genus: Lysobacter (50%)
8 7668 bp 71.53 50.42 94.37
cn_combo_scaffold_2507 XAN48_11
Order: Xanthomonadales (94.12%)
17 22043 bp 71.51 50.40 91.92
cn_combo_scaffold_9349 XAN48_191
Order: Xanthomonadales (57.14%)
7 7541 bp 68.31 50.34 82.07
cn_combo_scaffold_9336 XAN48_190
Genus: Lysobacter (50%)
6 6723 bp 69.31 50.30 92.06
cn_combo_scaffold_10244 XAN48_219
Order: Xanthomonadales (71.43%)
7 6185 bp 72.22 50.28 96.72
cn_combo_scaffold_5417 XAN48_83
Genus: Lysobacter (50%)
22 15297 bp 69.05 50.26 80.84
cn_combo_scaffold_7717 XAN48_149
Order: Xanthomonadales (100%)
8 8000 bp 68.86 50.25 92.51
cn_combo_scaffold_9879 XAN48_209
Genus: Pseudoxanthomonas (50%)
8 9540 bp 70.44 50.20 84.97
cn_combo_scaffold_12125 XAN48_287
Order: Xanthomonadales (50%)
8 8170 bp 69.17 50.17 91.51
cn_combo_scaffold_12359 XAN48_297
Order: Xanthomonadales (66.67%)
6 5173 bp 69.90 50.16 95.34
cn_combo_scaffold_14124 XAN48_319
Order: Xanthomonadales (57.14%)
7 6277 bp 69.49 50.12 96.83
cn_combo_scaffold_16651 XAN48_333
Genus: Lysobacter (57.14%)
7 5020 bp 69.64 50.12 88.96
cn_combo_scaffold_6021 XAN48_103
Species: Lysobacter dokdonensis (50%)
10 9964 bp 70.05 50.12 97.28
cn_combo_scaffold_20165 XAN48_338
Genus: Lysobacter (50%)
8 5564 bp 70.13 50.11 91.39
cn_combo_scaffold_20825 XAN48_340b
Species: Lysobacter daejeonensis (50%)
6 5551 bp 70.69 50.10 87.44
cn_combo_scaffold_4066 XAN48_45
Genus: Lysobacter (60%)
25 21807 bp 68.76 50.08 93.89
cn_combo_scaffold_7323 XAN48_136
Genus: Lysobacter (54.55%)
11 9066 bp 70.64 50.03 96.59
cn_combo_scaffold_12199 XAN48_293
Order: Xanthomonadales (100%)
5 5235 bp 69.28 50.01 88.08
cn_combo_scaffold_6261 XAN48_110
Order: Xanthomonadales (63.64%)
11 10761 bp 69.12 49.96 91.29
cn_combo_scaffold_8505 XAN48_167
Genus: Lysobacter (60%)
5 7350 bp 71.73 49.93 94.90
cn_combo_scaffold_3032 XAN48_22
Order: Xanthomonadales (60%)
30 28891 bp 70.90 49.85 85.84
cn_combo_scaffold_7938 XAN48_153
Genus: Lysobacter (50%)
10 7808 bp 68.42 49.82 87.06
cn_combo_scaffold_5177 XAN48_80
Order: Xanthomonadales (73.91%)
23 20856 bp 72.28 49.81 86.36
cn_combo_scaffold_3121 XAN48_26
Order: Xanthomonadales (68%)
25 29010 bp 59.39 49.79 94.44
cn_combo_scaffold_8588 XAN48_169
Order: Xanthomonadales (66.67%)
6 7289 bp 68.86 49.79 92.81
cn_combo_scaffold_6313 XAN48_112
Order: Xanthomonadales (75%)
8 9564 bp 70.91 49.68 91.31
cn_combo_scaffold_5675 XAN48_92
Order: Xanthomonadales (92.31%)
13 15087 bp 69.30 49.63 91.53
cn_combo_scaffold_5997 XAN48_101
Order: Xanthomonadales (55.56%)
9 9995 bp 70.32 49.60 91.37
cn_combo_scaffold_6713 XAN48_124
Order: Xanthomonadales (66.67%)
9 9067 bp 71.45 49.60 97.21
cn_combo_scaffold_5918 XAN48_98
Order: Xanthomonadales (90%)
10 10779 bp 71.03 49.57 98.41
cn_combo_scaffold_12522 XAN48_299
Order: Xanthomonadales (80%)
10 6590 bp 68.68 49.54 96.28
cn_combo_scaffold_7633 XAN48_144
Order: Xanthomonadales (88.89%)
9 8078 bp 69.30 49.48 94.44
cn_combo_scaffold_3120 XAN48_24
Genus: Lysobacter (63.16%)
19 18264 bp 68.57 49.47 93.68
cn_combo_scaffold_6546 XAN48_119
Genus: Lysobacter (50%)
6 9252 bp 70.95 49.47 98.64
cn_combo_scaffold_7411 XAN48_138
Genus: Lysobacter (50%)
10 8298 bp 69.05 49.45 86.12
cn_combo_scaffold_3320 XAN48_33
Order: Xanthomonadales (52.63%)
19 17928 bp 62.73 49.41 83.15
cn_combo_scaffold_3913 XAN48_40
Order: Xanthomonadales (78.57%)
14 14865 bp 72.13 49.39 93.22
cn_combo_scaffold_8031 XAN48_156
Species: Lysobacter dokdonensis (57.14%)
7 7744 bp 69.69 49.38 92.86
cn_combo_scaffold_11216 XAN48_248
Genus: Lysobacter (60%)
5 5667 bp 68.29 49.37 85.12
cn_combo_scaffold_12885 XAN48_309
Genus: Lysobacter (83.33%)
6 5155 bp 71.68 49.37 97.13
cn_combo_scaffold_16268 XAN48_329
Class: Gammaproteobacteria (84.62%)
13 10936 bp 69.18 49.37 90.61
cn_combo_scaffold_7124 XAN48_129
Order: Xanthomonadales (66.67%)
9 8577 bp 70.26 49.34 94.79
cn_combo_scaffold_10506 XAN48_228
Genus: Lysobacter (57.14%)
7 6030 bp 69.92 49.27 94.33
Displaying items 151-200 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.