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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 101-150 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_5056 XAN48_73
Order: Xanthomonadales (58.33%)
12 11656 bp 69.89 51.71 83.67
cn_combo_scaffold_10656 XAN48_233
Order: Xanthomonadales (77.78%)
9 7673 bp 71.59 51.66 86.13
cn_combo_scaffold_1609 XAN48_5
Class: Gammaproteobacteria (60.87%)
23 32426 bp 66.01 51.66 91.92
cn_combo_scaffold_5224 XAN48_81
Genus: Lysobacter (66.67%)
12 11286 bp 70.13 51.64 92.26
cn_combo_scaffold_9143 XAN48_185
Genus: Lysobacter (54.55%)
11 9923 bp 69.40 51.58 89.54
cn_combo_scaffold_10337 XAN48_223
Order: Xanthomonadales (75%)
8 8976 bp 72.27 51.57 81.22
cn_combo_scaffold_9234 XAN48_188
Order: Xanthomonadales (66.67%)
12 8959 bp 70.80 51.56 90.24
cn_combo_scaffold_9449 XAN48_193
Order: Xanthomonadales (80%)
5 6652 bp 69.59 51.56 92.18
cn_combo_scaffold_10815 XAN48_237
Order: Xanthomonadales (100%)
3 5864 bp 68.84 51.52 94.29
cn_combo_scaffold_5849 XAN48_95
Genus: Lysobacter (60%)
10 10836 bp 71.97 51.52 96.98
cn_combo_scaffold_4866 XAN48_62
Order: Xanthomonadales (85.71%)
28 23254 bp 70.02 51.46 93.81
cn_combo_scaffold_10410 XAN48_226
Order: Xanthomonadales (85.71%)
7 6083 bp 71.23 51.41 94.20
cn_combo_scaffold_12575 XAN48_301
Order: Xanthomonadales (87.5%)
8 5094 bp 68.81 51.37 94.70
cn_combo_scaffold_6041 XAN48_104
Genus: Lysobacter (72.73%)
11 9942 bp 69.09 51.35 93.42
cn_combo_scaffold_9190 XAN48_186
Genus: Lysobacter (57.14%)
7 6842 bp 69.19 51.32 92.39
cn_combo_scaffold_9838 XAN48_207
Genus: Lysobacter (87.5%)
8 9094 bp 71.33 51.28 96.36
cn_combo_scaffold_12154 XAN48_289
Genus: Lysobacter (66.67%)
6 5251 bp 70.23 51.19 95.52
cn_combo_scaffold_7121 XAN48_130
Order: Xanthomonadales (77.78%)
9 8581 bp 71.67 51.17 94.88
cn_combo_scaffold_12345 XAN48_296
Class: Gammaproteobacteria (50%)
6 5179 bp 70.90 51.15 91.99
cn_combo_scaffold_5052 XAN48_72
Order: Xanthomonadales (81.82%)
11 11956 bp 70.01 51.15 92.92
cn_combo_scaffold_10538 XAN48_231
Order: Xanthomonadales (100%)
7 6014 bp 69.21 51.13 88.99
cn_combo_scaffold_5522 XAN48_87
Genus: Lysobacter (54.55%)
11 11685 bp 70.01 51.13 92.71
cn_combo_scaffold_8751 XAN48_175
Order: Xanthomonadales (62.5%)
8 7178 bp 68.38 51.13 83.20
cn_combo_scaffold_9937 XAN48_211
Order: Xanthomonadales (77.78%)
9 8556 bp 68.96 51.12 89.76
cn_combo_scaffold_3773 XAN48_36
Genus: Lysobacter (55.56%)
9 15323 bp 71.28 51.11 96.42
cn_combo_scaffold_4787 XAN48_61
Genus: Lysobacter (50%)
14 12300 bp 70.41 51.07 94.71
cn_combo_scaffold_14372 XAN48_322
Class: Gammaproteobacteria (85.71%)
7 6526 bp 68.07 51.07 81.00
cn_combo_scaffold_11012 XAN48_244
Order: Xanthomonadales (55.56%)
9 10176 bp 71.60 51.06 87.85
cn_combo_scaffold_13267 XAN48_311
Order: Xanthomonadales (85.71%)
7 5749 bp 70.34 51.05 93.62
cn_combo_scaffold_10529 XAN48_230
Genus: Lysobacter (71.43%)
7 6019 bp 71.29 50.96 96.59
cn_combo_scaffold_1971 XAN48_7
Order: Xanthomonadales (60.71%)
28 27681 bp 65.40 50.93 95.22
cn_combo_scaffold_3153 XAN48_27
Order: Xanthomonadales (68.18%)
22 18100 bp 73.64 50.91 95.28
cn_combo_scaffold_5041 XAN48_71
Order: Xanthomonadales (81.82%)
11 11672 bp 69.98 50.91 95.28
cn_combo_scaffold_11031 XAN48_245
Order: Xanthomonadales (88.89%)
9 6700 bp 69.22 50.90 91.34
cn_combo_scaffold_9961 XAN48_213
Order: Xanthomonadales (62.5%)
8 6571 bp 68.91 50.81 90.49
cn_combo_scaffold_3962 XAN48_43
Order: Xanthomonadales (75%)
12 14743 bp 68.26 50.80 93.23
cn_combo_scaffold_9622 XAN48_203
Genus: Lysobacter (55.56%)
9 7304 bp 72.02 50.77 95.66
cn_combo_scaffold_11751 XAN48_268
Genus: Lysobacter (50%)
6 5648 bp 71.41 50.73 94.71
cn_combo_scaffold_9667 XAN48_205
Genus: Lysobacter (62.5%)
8 6515 bp 69.56 50.70 95.55
cn_combo_scaffold_3212 XAN48_30
Order: Xanthomonadales (74.42%)
43 38978 bp 69.35 50.68 91.93
cn_combo_scaffold_11459 XAN48_260
Order: Xanthomonadales (71.43%)
7 5556 bp 69.01 50.67 84.56
cn_combo_scaffold_11831 XAN48_274
Order: Xanthomonadales (66.67%)
3 5385 bp 69.92 50.66 95.71
cn_combo_scaffold_8238 XAN48_163
Phylum: Proteobacteria (88.89%)
9 7565 bp 69.46 50.65 92.56
cn_combo_scaffold_6364 XAN48_115
Genus: Lysobacter (63.64%)
11 9502 bp 73.18 50.62 91.84
cn_combo_scaffold_11460 XAN48_259
Genus: Xanthomonas (50%)
6 5556 bp 68.05 50.61 96.54
cn_combo_scaffold_11782 XAN48_270
Order: Xanthomonadales (83.33%)
6 7421 bp 69.01 50.61 96.42
cn_combo_scaffold_11228 XAN48_249
Genus: Lysobacter (57.14%)
7 7293 bp 70.59 50.56 91.36
cn_combo_scaffold_11691 XAN48_266
Class: Gammaproteobacteria (80%)
5 5443 bp 71.65 50.56 96.16
cn_combo_scaffold_12215 XAN48_294
Order: Xanthomonadales (87.5%)
8 5229 bp 70.87 50.55 91.85
cn_combo_scaffold_10801 XAN48_236
Order: Xanthomonadales (100%)
9 5872 bp 69.74 50.54 94.26
Displaying items 101-150 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.