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NECEvent2014_8_1_Clostridium_paraputrificum_29_36

NECEvent2014_8_1_Clostridium_30_43
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

rpS3 100% to Clostridium paraputrificum

Displaying items 51-100 of 233 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_1582 178_001_scaffold_1582
Genus: Clostridium (66.67%)
6 2998 bp 27.65 19.96 93.86
NECEvent2014_8_1_scaffold_1163 178_001_scaffold_1163
Genus: Clostridium (80%)
5 4076 bp 27.36 20.50 83.32
NECEvent2014_8_1_scaffold_1169 178_001_scaffold_1169
Genus: Clostridium (100%)
5 4054 bp 28.17 20.50 95.39
NECEvent2014_8_1_scaffold_250 178_001_scaffold_250
Genus: Clostridium (100%)
19 14429 bp 27.81 21.85 85.10
NECEvent2014_8_1_scaffold_2217 178_001_scaffold_2217
Species: Clostridium baratii (50%)
2 2135 bp 28.20 21.92 85.29
NECEvent2014_8_1_scaffold_3390 178_001_scaffold_3390
Species: Clostridium pasteurianum (50%)
2 1380 bp 28.12 21.96 88.70
NECEvent2014_8_1_scaffold_484 178_001_scaffold_484
Genus: Clostridium (63.64%)
11 8944 bp 27.88 21.97 91.40
NECEvent2014_8_1_scaffold_2547 178_001_scaffold_2547 3 1847 bp 26.64 22.58 82.35
NECEvent2014_8_1_scaffold_2889 178_001_scaffold_2889
Species: Clostridium celatum (50%)
2 1635 bp 27.65 22.75 75.60
NECEvent2014_8_1_scaffold_1966 178_001_scaffold_1966
Phylum: Firmicutes (60%)
5 2426 bp 27.16 22.82 87.43
NECEvent2014_8_1_scaffold_615 178_001_scaffold_615
Genus: Clostridium (90%)
10 7333 bp 28.50 23.14 89.80
NECEvent2014_8_1_scaffold_934 178_001_scaffold_934
Genus: Clostridium (62.5%)
8 5002 bp 26.79 24.11 86.67
NECEvent2014_8_1_scaffold_346 178_001_scaffold_346
Genus: Clostridium (85.71%)
14 11443 bp 28.24 24.37 86.25
NECEvent2014_8_1_scaffold_1460 178_001_scaffold_1460 5 3268 bp 27.33 24.60 84.55
NECEvent2014_8_1_scaffold_581 178_001_scaffold_581
Order: Clostridiales (62.5%)
8 7729 bp 28.45 24.84 86.40
NECEvent2014_8_1_scaffold_468 178_001_scaffold_468
Order: Bacillales (54.55%)
11 9132 bp 28.39 24.90 86.07
NECEvent2014_8_1_scaffold_2527 178_001_scaffold_2527 3 1863 bp 28.66 25.04 87.44
NECEvent2014_8_1_scaffold_295 178_001_scaffold_295
Phylum: Firmicutes (86.67%)
15 12881 bp 27.21 25.49 72.69
NECEvent2014_8_1_scaffold_401 178_001_scaffold_401
Genus: Clostridium (91.67%)
12 10113 bp 27.88 25.88 84.07
NECEvent2014_8_1_scaffold_1085 178_001_scaffold_1085
Genus: Clostridium (50%)
4 4293 bp 28.46 26.28 85.81
NECEvent2014_8_1_scaffold_856 178_001_scaffold_856
Order: Clostridiales (66.67%)
3 5434 bp 28.23 26.39 93.96
NECEvent2014_8_1_scaffold_1051 178_001_scaffold_1051
Genus: Clostridium (75%)
4 4453 bp 27.40 26.51 88.59
NECEvent2014_8_1_scaffold_409 178_001_scaffold_409
Genus: Clostridium (66.67%)
15 9965 bp 27.90 26.73 80.02
NECEvent2014_8_1_scaffold_866 178_001_scaffold_866
Genus: Clostridium (100%)
5 5374 bp 27.78 26.94 85.69
NECEvent2014_8_1_scaffold_243 178_001_scaffold_243
Genus: Clostridium (77.78%)
18 14925 bp 28.40 27.02 87.26
NECEvent2014_8_1_scaffold_496 178_001_scaffold_496
Species: Clostridium sartagoforme (66.67%)
6 8783 bp 27.04 27.74 92.46
NECEvent2014_8_1_scaffold_1239 178_001_scaffold_1239
Genus: Clostridium (75%)
4 3868 bp 27.56 28.00 89.89
NECEvent2014_8_1_scaffold_2258 178_001_scaffold_2258
Species: Clostridium baratii (50%)
2 2090 bp 29.43 28.42 97.75
NECEvent2014_8_1_scaffold_968 178_001_scaffold_968
Order: Clostridiales (71.43%)
7 4836 bp 28.37 28.44 83.25
NECEvent2014_8_1_scaffold_753 178_001_scaffold_753
Genus: Clostridium (71.43%)
7 6206 bp 28.88 28.50 93.54
NECEvent2014_8_1_scaffold_396 178_001_scaffold_396
Genus: Clostridium (100%)
11 10209 bp 27.60 28.62 86.81
NECEvent2014_8_1_scaffold_461 178_001_scaffold_461
Genus: Clostridium (60%)
10 9200 bp 29.37 28.73 83.64
NECEvent2014_8_1_scaffold_164 178_001_scaffold_164
Genus: Clostridium (85.71%)
21 19082 bp 28.68 28.77 88.45
NECEvent2014_8_1_scaffold_2020 178_001_scaffold_2020
Species: Clostridium butyricum (100%)
1 2353 bp 30.26 28.81 59.67
NECEvent2014_8_1_scaffold_1106 178_001_scaffold_1106
Genus: Paenibacillus (50%)
6 4245 bp 28.69 28.87 81.91
NECEvent2014_8_1_scaffold_1464 178_001_scaffold_1464
Genus: Clostridium (100%)
3 3266 bp 29.52 29.53 91.30
NECEvent2014_8_1_scaffold_227 178_001_scaffold_227
Genus: Clostridium (94.12%)
17 15377 bp 28.69 29.63 92.57
NECEvent2014_8_1_scaffold_1308 178_001_scaffold_1308
Species: Dorea sp. CAG:105 (50%)
2 3647 bp 27.47 29.74 89.99
NECEvent2014_8_1_scaffold_552 178_001_scaffold_552
Genus: Clostridium (100%)
6 8101 bp 29.32 29.85 83.14
NECEvent2014_8_1_scaffold_4369 178_001_scaffold_4369
Species: Enterococcus faecalis (100%)
1 1061 bp 32.80 30.11 49.76
NECEvent2014_8_1_scaffold_730 178_001_scaffold_730
Species: Clostridium perfringens (50%)
6 6386 bp 28.39 30.47 87.19
NECEvent2014_8_1_scaffold_709 178_001_scaffold_709
Genus: Clostridium (66.67%)
6 6540 bp 28.87 30.62 78.17
NECEvent2014_8_1_scaffold_1199 178_001_scaffold_1199
Species: Clostridium colicanis (66.67%)
3 3987 bp 29.47 30.70 96.09
NECEvent2014_8_1_scaffold_598 178_001_scaffold_598
Genus: Clostridium (72.73%)
11 7538 bp 28.04 30.72 90.54
NECEvent2014_8_1_scaffold_348 178_001_scaffold_348
Genus: Clostridium (83.33%)
12 11431 bp 29.68 30.99 93.61
NECEvent2014_8_1_scaffold_246 178_001_scaffold_246
Genus: Clostridium (64.29%)
14 14753 bp 28.86 31.20 89.64
NECEvent2014_8_1_scaffold_440 178_001_scaffold_440
Genus: Clostridium (85.71%)
7 9492 bp 29.28 31.26 90.42
NECEvent2014_8_1_scaffold_229 178_001_scaffold_229
Genus: Clostridium (70.59%)
17 15272 bp 28.68 31.27 84.76
NECEvent2014_8_1_scaffold_405 178_001_scaffold_405
Genus: Clostridium (75%)
12 10040 bp 29.38 31.54 92.72
NECEvent2014_8_1_scaffold_167 178_001_scaffold_167
Genus: Clostridium (85.71%)
21 18849 bp 28.87 31.55 92.30
Displaying items 51-100 of 233 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.