ggKbase home page

NECEvent2014_8_1_Clostridium_perfringens-rel_30_12

NECEvent2014_8_1_Clostridium_perfringens_31_10
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 551-600 of 731 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_3979 178_001_scaffold_3979
Species: Clostridium perfringens (100%)
1 1165 bp 33.30 8.24 81.89
NECEvent2014_8_1_scaffold_1676 178_001_scaffold_1676
Species: Clostridium perfringens (100%)
1 2841 bp 34.35 16.05 93.77
NECEvent2014_8_1_scaffold_2958 178_001_scaffold_2958
Species: Clostridium pasteurianum (100%)
1 1591 bp 26.02 9.05 99.94
NECEvent2014_8_1_scaffold_4238 178_001_scaffold_4238
Species: Clostridium sp. IBUN22A (100%)
1 1095 bp 24.75 7.53 81.92
NECEvent2014_8_1_scaffold_2703 178_001_scaffold_2703
Species: Clostridium perfringens (100%)
1 1744 bp 31.14 10.15 93.41
NECEvent2014_8_1_scaffold_3215 178_001_scaffold_3215
Species: Clostridium perfringens (100%)
1 1453 bp 31.25 7.23 99.93
NECEvent2014_8_1_scaffold_3471 178_001_scaffold_3471
Species: Clostridium perfringens (100%)
1 1348 bp 35.76 18.03 91.02
NECEvent2014_8_1_scaffold_3727 178_001_scaffold_3727
Species: Clostridium perfringens (100%)
1 1248 bp 31.25 11.06 81.97
NECEvent2014_8_1_scaffold_4240 178_001_scaffold_4240
Species: Clostridium perfringens (100%)
1 1094 bp 30.80 7.13 99.82
NECEvent2014_8_1_scaffold_4242 178_001_scaffold_4242
Species: Clostridium perfringens (100%)
1 1094 bp 32.82 7.40 98.17
NECEvent2014_8_1_scaffold_1939 178_001_scaffold_1939
Species: Clostridium perfringens (100%)
1 2456 bp 32.04 8.31 99.92
NECEvent2014_8_1_scaffold_4243 178_001_scaffold_4243
Species: Clostridium perfringens (100%)
1 1093 bp 35.77 12.35 99.91
NECEvent2014_8_1_scaffold_3476 178_001_scaffold_3476
Species: Clostridium perfringens (100%)
1 1345 bp 30.41 8.03 99.93
NECEvent2014_8_1_scaffold_4500 178_001_scaffold_4500
Species: Clostridium perfringens (100%)
1 1027 bp 30.96 9.93 98.44
NECEvent2014_8_1_scaffold_1685 178_001_scaffold_1685
Species: Clostridium perfringens (100%)
1 2828 bp 31.72 8.49 96.75
NECEvent2014_8_1_scaffold_4506 178_001_scaffold_4506
Species: Clostridium perfringens (100%)
1 1026 bp 31.77 7.31 99.71
NECEvent2014_8_1_scaffold_2972 178_001_scaffold_2972
Species: Clostridium perfringens (100%)
1 1583 bp 31.71 13.64 81.30
NECEvent2014_8_1_scaffold_3229 178_001_scaffold_3229
Species: Clostridium perfringens (100%)
1 1449 bp 34.16 15.32 99.79
NECEvent2014_8_1_scaffold_4253 178_001_scaffold_4253
Species: Clostridium perfringens (100%)
1 1091 bp 29.70 6.05 75.07
NECEvent2014_8_1_scaffold_3999 178_001_scaffold_3999
Species: Clostridium perfringens (100%)
1 1161 bp 29.80 4.39 99.74
NECEvent2014_8_1_scaffold_4256 178_001_scaffold_4256
Species: Clostridium perfringens (100%)
1 1090 bp 29.27 5.50 91.93
NECEvent2014_8_1_scaffold_2721 178_001_scaffold_2721
Species: Clostridium perfringens (100%)
1 1733 bp 29.77 6.06 93.13
NECEvent2014_8_1_scaffold_4257 178_001_scaffold_4257
Species: Clostridium perfringens (100%)
1 1089 bp 28.93 4.96 64.74
NECEvent2014_8_1_scaffold_3235 178_001_scaffold_3235
Species: Clostridium perfringens (100%)
1 1447 bp 32.00 10.16 92.47
NECEvent2014_8_1_scaffold_4515 178_001_scaffold_4515
Species: Clostridium perfringens (100%)
1 1024 bp 26.27 2.64 99.90
NECEvent2014_8_1_scaffold_3750 178_001_scaffold_3750
Species: Clostridium perfringens (100%)
1 1240 bp 29.76 6.29 99.92
NECEvent2014_8_1_scaffold_2984 178_001_scaffold_2984
Species: Clostridium perfringens (100%)
1 1575 bp 31.56 10.48 95.43
NECEvent2014_8_1_scaffold_3752 178_001_scaffold_3752
Species: Clostridium perfringens (100%)
1 1239 bp 31.48 6.54 92.49
NECEvent2014_8_1_scaffold_2474 178_001_scaffold_2474
Species: Clostridium perfringens (100%)
1 1902 bp 31.23 8.83 99.84
NECEvent2014_8_1_scaffold_1451 178_001_scaffold_1451
Species: Clostridium perfringens (100%)
1 3290 bp 31.37 6.84 99.94
NECEvent2014_8_1_scaffold_2219 178_001_scaffold_2219
Species: Clostridium perfringens (100%)
1 2134 bp 34.16 18.98 97.00
NECEvent2014_8_1_scaffold_4524 178_001_scaffold_4524
Species: Clostridium perfringens (100%)
1 1023 bp 31.87 9.38 100.00
NECEvent2014_8_1_scaffold_3501 178_001_scaffold_3501
Species: Clostridium perfringens (100%)
1 1334 bp 32.76 7.20 96.93
NECEvent2014_8_1_scaffold_3758 178_001_scaffold_3758
Species: Clostridium perfringens (100%)
1 1236 bp 33.25 8.74 99.76
NECEvent2014_8_1_scaffold_4526 178_001_scaffold_4526
Species: Clostridium perfringens (100%)
1 1023 bp 28.54 4.99 97.07
NECEvent2014_8_1_scaffold_2479 178_001_scaffold_2479
Species: Clostridium perfringens (100%)
1 1899 bp 32.28 12.32 95.10
NECEvent2014_8_1_scaffold_3759 178_001_scaffold_3759
Species: Clostridium perfringens (100%)
1 1236 bp 28.32 6.07 100.00
NECEvent2014_8_1_scaffold_3760 178_001_scaffold_3760
Species: Clostridium perfringens (100%)
1 1236 bp 32.04 10.68 93.69
NECEvent2014_8_1_scaffold_4529 178_001_scaffold_4529
Species: Clostridium perfringens (100%)
1 1022 bp 31.41 6.46 99.80
NECEvent2014_8_1_scaffold_4021 178_001_scaffold_4021
Species: Clostridium perfringens (100%)
1 1155 bp 32.03 13.25 91.69
NECEvent2014_8_1_scaffold_4277 178_001_scaffold_4277
Species: Clostridium perfringens (100%)
1 1084 bp 30.26 4.43 87.18
NECEvent2014_8_1_scaffold_4533 178_001_scaffold_4533
Species: Clostridium perfringens (100%)
1 1021 bp 32.32 16.45 98.14
NECEvent2014_8_1_scaffold_2231 178_001_scaffold_2231
Species: Clostridium perfringens (100%)
1 2120 bp 31.18 7.64 80.94
NECEvent2014_8_1_scaffold_2999 178_001_scaffold_2999
Species: Clostridium perfringens (100%)
1 1568 bp 29.46 5.36 81.89
NECEvent2014_8_1_scaffold_4023 178_001_scaffold_4023
Species: Clostridium perfringens (100%)
1 1155 bp 30.13 6.49 99.74
NECEvent2014_8_1_scaffold_2744 178_001_scaffold_2744
Species: Clostridium perfringens (100%)
1 1718 bp 30.97 7.86 85.22
NECEvent2014_8_1_scaffold_3000 178_001_scaffold_3000
Species: Clostridium perfringens (100%)
1 1566 bp 30.40 11.88 77.97
NECEvent2014_8_1_scaffold_4536 178_001_scaffold_4536
Species: Clostridium perfringens (100%)
1 1020 bp 29.12 5.59 60.29
NECEvent2014_8_1_scaffold_1209 178_001_scaffold_1209
Species: Clostridium perfringens (100%)
1 3963 bp 31.42 11.88 99.92
NECEvent2014_8_1_scaffold_2233 178_001_scaffold_2233
Species: Clostridium perfringens (100%)
1 2116 bp 30.39 7.37 99.95
Displaying items 551-600 of 731 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.