ggKbase home page

SCNPILOT_EXPT_1000_BF_Shinella_65_6

SCNPILOT_EXPT_1000_BF_Shinella_sp__DD12_65_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Shinella sp. DD12  →  Shinella  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from TS-ESOM, bin is a bit rough, added all Shinella scaffolds from ggkbase

Displaying items 251-300 of 914 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_56459
Species: Shinella sp. DD12 (66.67%)
3 1260 bp 57.46 3.17 77.86
SCNpilot_expt_1000_bf_scaffold_3344
Class: Alphaproteobacteria (54.55%)
11 11451 bp 63.13 5.20 77.91
SCNpilot_expt_1000_bf_scaffold_7933
Species: Shinella sp. DD12 (80%)
15 12817 bp 65.55 7.49 77.92
SCNpilot_expt_1000_bf_scaffold_32576
Species: Shinella sp. DD12 (100%)
3 2954 bp 66.42 5.84 78.00
SCNpilot_expt_1000_bf_scaffold_9341
Class: Alphaproteobacteria (50%)
16 14928 bp 63.54 4.59 78.01
SCNpilot_expt_1000_bf_scaffold_29229
Species: Shinella sp. DD12 (50%)
2 1915 bp 69.77 5.61 78.02
SCNpilot_expt_1000_bf_scaffold_4939
Order: Rhizobiales (80%)
10 8957 bp 67.86 5.50 78.07
SCNpilot_expt_1000_bf_scaffold_7101
Species: Shinella sp. DD12 (50%)
8 10208 bp 64.81 6.07 78.09
SCNpilot_expt_1000_bf_scaffold_9441
Species: Shinella sp. DD12 (73.33%)
15 9406 bp 63.68 5.61 78.33
SCNpilot_expt_1000_bf_scaffold_8304
Species: Shinella sp. DD12 (77.78%)
9 9595 bp 65.90 5.50 78.35
SCNpilot_expt_1000_bf_scaffold_54431
Species: Shinella sp. DD12 (100%)
2 1106 bp 65.01 2.71 78.39
SCNpilot_expt_1000_bf_scaffold_39946
Species: Shinella sp. DD12 (100%)
2 1683 bp 62.09 2.97 78.43
SCNpilot_expt_1000_bf_scaffold_57624
Species: Shinella sp. DD12 (100%)
2 1231 bp 61.25 2.44 78.47
SCNpilot_expt_1000_bf_scaffold_15960
Species: Shinella sp. DD12 (60%)
10 7097 bp 63.24 6.55 78.50
SCNpilot_expt_1000_bf_scaffold_30814
Species: Shinella sp. DD12 (100%)
2 1842 bp 61.73 2.58 78.50
SCNpilot_expt_1000_bf_scaffold_8138
Order: Rhizobiales (78.57%)
14 10451 bp 63.75 5.07 78.54
SCNpilot_expt_1000_bf_scaffold_68435
Species: Shinella sp. DD12 (50%)
2 1088 bp 64.89 3.68 78.58
SCNpilot_expt_1000_bf_scaffold_2803
Species: Shinella sp. DD12 (93.33%)
30 24890 bp 64.53 6.32 78.59
SCNpilot_expt_1000_bf_scaffold_17105
Species: Shinella sp. DD12 (60%)
10 8377 bp 64.90 6.42 78.61
SCNpilot_expt_1000_bf_scaffold_26202
Species: Shinella sp. DD12 (100%)
3 2188 bp 60.28 3.31 78.70
SCNpilot_expt_1000_bf_scaffold_12475
Species: Shinella sp. DD12 (85.71%)
7 6461 bp 63.55 7.51 78.75
SCNpilot_expt_1000_bf_scaffold_5077
Order: Rhizobiales (86.67%)
15 16166 bp 63.00 6.54 78.76
SCNpilot_expt_1000_bf_scaffold_11319
Species: Shinella sp. DD12 (75%)
8 6973 bp 62.41 5.92 78.78
SCNpilot_expt_1000_bf_scaffold_4088
Species: Shinella sp. DD12 (83.33%)
12 9312 bp 65.81 6.44 78.80
SCNpilot_expt_1000_bf_scaffold_43446
Species: Shinella sp. DD12 (100%)
1 1065 bp 60.19 2.82 78.87
SCNpilot_expt_1000_bf_scaffold_12816
Species: Shinella sp. DD12 (75%)
4 3634 bp 64.97 5.09 78.92
SCNpilot_expt_1000_bf_scaffold_5289
Order: Rhizobiales (85.71%)
7 9734 bp 62.77 5.60 78.93
SCNpilot_expt_1000_bf_scaffold_53404
Species: Shinella sp. DD12 (75%)
4 1854 bp 54.31 2.83 78.96
SCNpilot_expt_1000_bf_scaffold_50486
Species: Shinella sp. DD12 (100%)
2 1424 bp 61.66 4.04 79.00
SCNpilot_expt_1000_bf_scaffold_45132
Species: Shinella sp. DD12 (100%)
2 1373 bp 65.62 3.10 79.10
SCNpilot_expt_1000_bf_scaffold_19469
Species: Shinella sp. DD12 (100%)
5 4054 bp 66.70 6.48 79.11
SCNpilot_expt_1000_bf_scaffold_18572
Species: Shinella sp. DD12 (75%)
4 3219 bp 62.57 6.29 79.12
SCNpilot_expt_1000_bf_scaffold_44209
Species: Shinella sp. DD12 (66.67%)
3 1863 bp 58.35 3.22 79.23
SCNpilot_expt_1000_bf_scaffold_17545
Species: Shinella sp. DD12 (50%)
8 6052 bp 62.66 6.53 79.36
SCNpilot_expt_1000_bf_scaffold_10563
Species: Shinella sp. DD12 (71.43%)
7 4820 bp 63.71 5.55 79.42
SCNpilot_expt_1000_bf_scaffold_64448
Species: Shinella sp. DD12 (100%)
2 1129 bp 63.77 3.10 79.45
SCNpilot_expt_1000_bf_scaffold_10351
Species: Shinella sp. DD12 (76.92%)
13 11434 bp 66.12 6.93 79.50
SCNpilot_expt_1000_bf_scaffold_65739
Species: Shinella sp. DD12 (100%)
2 1083 bp 55.03 3.00 79.50
SCNpilot_expt_1000_bf_scaffold_6416
Order: Rhizobiales (69.57%)
23 21938 bp 63.62 6.06 79.51
SCNpilot_expt_1000_bf_scaffold_8498
Species: Shinella sp. DD12 (88.89%)
18 17152 bp 63.85 5.55 79.53
SCNpilot_expt_1000_bf_scaffold_64980
Species: Shinella sp. DD12 (66.67%)
3 1037 bp 55.26 3.86 79.56
SCNpilot_expt_1000_bf_scaffold_25794
Species: Shinella sp. DD12 (50%)
2 1692 bp 63.06 3.69 79.61
SCNpilot_expt_1000_bf_scaffold_3301
Species: Ketogulonicigenium vulgare (92.31%)
13 8219 bp 60.06 6.97 79.64
SCNpilot_expt_1000_bf_scaffold_15529
Genus: Rhizobium (57.14%)
7 5296 bp 66.88 5.38 79.65
SCNpilot_expt_1000_bf_scaffold_15591
Species: Shinella sp. DD12 (80%)
5 3660 bp 65.87 4.10 79.67
SCNpilot_expt_1000_bf_scaffold_14493
Species: Shinella sp. DD12 (66.67%)
9 6575 bp 61.76 4.71 79.80
SCNpilot_expt_1000_bf_scaffold_15896
Class: Alphaproteobacteria (55.56%)
9 6917 bp 60.45 3.90 79.89
SCNpilot_expt_1000_bf_scaffold_10366
Species: Shinella sp. DD12 (100%)
11 9485 bp 65.09 6.40 79.93
SCNpilot_expt_1000_bf_scaffold_12528
Species: Shinella sp. DD12 (100%)
9 7574 bp 64.47 6.30 80.09
SCNpilot_expt_1000_bf_scaffold_9512
Species: Shinella sp. DD12 (92.86%)
14 13845 bp 64.20 6.32 80.11
Displaying items 251-300 of 914 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.