Consensus taxonomy: Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria
from TS-ESOM, bin is a bit rough, added all Shinella scaffolds from ggkbase
contig | # features | sequence size | GC content (%) | Cov | Coding Density (%) | |
---|---|---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_56459
Species:
Shinella sp. DD12 (66.67%)
|
3 | 1260 bp | 57.46 | 3.17 | 77.86 | |
SCNpilot_expt_1000_bf_scaffold_3344
Class:
Alphaproteobacteria (54.55%)
|
11 | 11451 bp | 63.13 | 5.20 | 77.91 | |
SCNpilot_expt_1000_bf_scaffold_7933
Species:
Shinella sp. DD12 (80%)
|
15 | 12817 bp | 65.55 | 7.49 | 77.92 | |
SCNpilot_expt_1000_bf_scaffold_32576
Species:
Shinella sp. DD12 (100%)
|
3 | 2954 bp | 66.42 | 5.84 | 78.00 | |
SCNpilot_expt_1000_bf_scaffold_9341
Class:
Alphaproteobacteria (50%)
|
16 | 14928 bp | 63.54 | 4.59 | 78.01 | |
SCNpilot_expt_1000_bf_scaffold_29229
Species:
Shinella sp. DD12 (50%)
|
2 | 1915 bp | 69.77 | 5.61 | 78.02 | |
SCNpilot_expt_1000_bf_scaffold_4939
Order:
Rhizobiales (80%)
|
10 | 8957 bp | 67.86 | 5.50 | 78.07 | |
SCNpilot_expt_1000_bf_scaffold_7101
Species:
Shinella sp. DD12 (50%)
|
8 | 10208 bp | 64.81 | 6.07 | 78.09 | |
SCNpilot_expt_1000_bf_scaffold_9441
Species:
Shinella sp. DD12 (73.33%)
|
15 | 9406 bp | 63.68 | 5.61 | 78.33 | |
SCNpilot_expt_1000_bf_scaffold_8304
Species:
Shinella sp. DD12 (77.78%)
|
9 | 9595 bp | 65.90 | 5.50 | 78.35 | |
SCNpilot_expt_1000_bf_scaffold_54431
Species:
Shinella sp. DD12 (100%)
|
2 | 1106 bp | 65.01 | 2.71 | 78.39 | |
SCNpilot_expt_1000_bf_scaffold_39946
Species:
Shinella sp. DD12 (100%)
|
2 | 1683 bp | 62.09 | 2.97 | 78.43 | |
SCNpilot_expt_1000_bf_scaffold_57624
Species:
Shinella sp. DD12 (100%)
|
2 | 1231 bp | 61.25 | 2.44 | 78.47 | |
SCNpilot_expt_1000_bf_scaffold_15960
Species:
Shinella sp. DD12 (60%)
|
10 | 7097 bp | 63.24 | 6.55 | 78.50 | |
SCNpilot_expt_1000_bf_scaffold_30814
Species:
Shinella sp. DD12 (100%)
|
2 | 1842 bp | 61.73 | 2.58 | 78.50 | |
SCNpilot_expt_1000_bf_scaffold_8138
Order:
Rhizobiales (78.57%)
|
14 | 10451 bp | 63.75 | 5.07 | 78.54 | |
SCNpilot_expt_1000_bf_scaffold_68435
Species:
Shinella sp. DD12 (50%)
|
2 | 1088 bp | 64.89 | 3.68 | 78.58 | |
SCNpilot_expt_1000_bf_scaffold_2803
Species:
Shinella sp. DD12 (93.33%)
|
30 | 24890 bp | 64.53 | 6.32 | 78.59 | |
SCNpilot_expt_1000_bf_scaffold_17105
Species:
Shinella sp. DD12 (60%)
|
10 | 8377 bp | 64.90 | 6.42 | 78.61 | |
SCNpilot_expt_1000_bf_scaffold_26202
Species:
Shinella sp. DD12 (100%)
|
3 | 2188 bp | 60.28 | 3.31 | 78.70 | |
SCNpilot_expt_1000_bf_scaffold_12475
Species:
Shinella sp. DD12 (85.71%)
|
7 | 6461 bp | 63.55 | 7.51 | 78.75 | |
SCNpilot_expt_1000_bf_scaffold_5077
Order:
Rhizobiales (86.67%)
|
15 | 16166 bp | 63.00 | 6.54 | 78.76 | |
SCNpilot_expt_1000_bf_scaffold_11319
Species:
Shinella sp. DD12 (75%)
|
8 | 6973 bp | 62.41 | 5.92 | 78.78 | |
SCNpilot_expt_1000_bf_scaffold_4088
Species:
Shinella sp. DD12 (83.33%)
|
12 | 9312 bp | 65.81 | 6.44 | 78.80 | |
SCNpilot_expt_1000_bf_scaffold_43446
Species:
Shinella sp. DD12 (100%)
|
1 | 1065 bp | 60.19 | 2.82 | 78.87 | |
SCNpilot_expt_1000_bf_scaffold_12816
Species:
Shinella sp. DD12 (75%)
|
4 | 3634 bp | 64.97 | 5.09 | 78.92 | |
SCNpilot_expt_1000_bf_scaffold_5289
Order:
Rhizobiales (85.71%)
|
7 | 9734 bp | 62.77 | 5.60 | 78.93 | |
SCNpilot_expt_1000_bf_scaffold_53404
Species:
Shinella sp. DD12 (75%)
|
4 | 1854 bp | 54.31 | 2.83 | 78.96 | |
SCNpilot_expt_1000_bf_scaffold_50486
Species:
Shinella sp. DD12 (100%)
|
2 | 1424 bp | 61.66 | 4.04 | 79.00 | |
SCNpilot_expt_1000_bf_scaffold_45132
Species:
Shinella sp. DD12 (100%)
|
2 | 1373 bp | 65.62 | 3.10 | 79.10 | |
SCNpilot_expt_1000_bf_scaffold_19469
Species:
Shinella sp. DD12 (100%)
|
5 | 4054 bp | 66.70 | 6.48 | 79.11 | |
SCNpilot_expt_1000_bf_scaffold_18572
Species:
Shinella sp. DD12 (75%)
|
4 | 3219 bp | 62.57 | 6.29 | 79.12 | |
SCNpilot_expt_1000_bf_scaffold_44209
Species:
Shinella sp. DD12 (66.67%)
|
3 | 1863 bp | 58.35 | 3.22 | 79.23 | |
SCNpilot_expt_1000_bf_scaffold_17545
Species:
Shinella sp. DD12 (50%)
|
8 | 6052 bp | 62.66 | 6.53 | 79.36 | |
SCNpilot_expt_1000_bf_scaffold_10563
Species:
Shinella sp. DD12 (71.43%)
|
7 | 4820 bp | 63.71 | 5.55 | 79.42 | |
SCNpilot_expt_1000_bf_scaffold_64448
Species:
Shinella sp. DD12 (100%)
|
2 | 1129 bp | 63.77 | 3.10 | 79.45 | |
SCNpilot_expt_1000_bf_scaffold_10351
Species:
Shinella sp. DD12 (76.92%)
|
13 | 11434 bp | 66.12 | 6.93 | 79.50 | |
SCNpilot_expt_1000_bf_scaffold_65739
Species:
Shinella sp. DD12 (100%)
|
2 | 1083 bp | 55.03 | 3.00 | 79.50 | |
SCNpilot_expt_1000_bf_scaffold_6416
Order:
Rhizobiales (69.57%)
|
23 | 21938 bp | 63.62 | 6.06 | 79.51 | |
SCNpilot_expt_1000_bf_scaffold_8498
Species:
Shinella sp. DD12 (88.89%)
|
18 | 17152 bp | 63.85 | 5.55 | 79.53 | |
SCNpilot_expt_1000_bf_scaffold_64980
Species:
Shinella sp. DD12 (66.67%)
|
3 | 1037 bp | 55.26 | 3.86 | 79.56 | |
SCNpilot_expt_1000_bf_scaffold_25794
Species:
Shinella sp. DD12 (50%)
|
2 | 1692 bp | 63.06 | 3.69 | 79.61 | |
SCNpilot_expt_1000_bf_scaffold_3301
Species:
Ketogulonicigenium vulgare (92.31%)
|
13 | 8219 bp | 60.06 | 6.97 | 79.64 | |
SCNpilot_expt_1000_bf_scaffold_15529
Genus:
Rhizobium (57.14%)
|
7 | 5296 bp | 66.88 | 5.38 | 79.65 | |
SCNpilot_expt_1000_bf_scaffold_15591
Species:
Shinella sp. DD12 (80%)
|
5 | 3660 bp | 65.87 | 4.10 | 79.67 | |
SCNpilot_expt_1000_bf_scaffold_14493
Species:
Shinella sp. DD12 (66.67%)
|
9 | 6575 bp | 61.76 | 4.71 | 79.80 | |
SCNpilot_expt_1000_bf_scaffold_15896
Class:
Alphaproteobacteria (55.56%)
|
9 | 6917 bp | 60.45 | 3.90 | 79.89 | |
SCNpilot_expt_1000_bf_scaffold_10366
Species:
Shinella sp. DD12 (100%)
|
11 | 9485 bp | 65.09 | 6.40 | 79.93 | |
SCNpilot_expt_1000_bf_scaffold_12528
Species:
Shinella sp. DD12 (100%)
|
9 | 7574 bp | 64.47 | 6.30 | 80.09 | |
SCNpilot_expt_1000_bf_scaffold_9512
Species:
Shinella sp. DD12 (92.86%)
|
14 | 13845 bp | 64.20 | 6.32 | 80.11 |