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scnpilot_dereplicated_Sphingobium_1

scnpilot-dereplicated_Sphingobium_64_1
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Sphingobium  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 201-250 of 250 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_6485_curated
Genus: Sphingobium (71.43%)
7 9253 bp 60.67 1.00 80.18
SCNpilot_expt_1000_bf_scaffold_12119_curated
Order: Sphingomonadales (66.67%)
7 5994 bp 61.96 1.00 61.96
SCNpilot_expt_1000_bf_scaffold_3908_curated
Species: Sphingobium sp. SYK-6 (85.71%)
7 6909 bp 67.03 1.00 89.19
SCNpilot_expt_1000_bf_scaffold_13942_curated
Species: Sphingobium sp. SYK-6 (57.14%)
7 5527 bp 66.42 1.00 82.29
SCNpilot_expt_1000_bf_scaffold_11179_curated
Class: Alphaproteobacteria (66.67%)
6 5642 bp 62.32 1.00 76.46
SCNpilot_expt_1000_bf_scaffold_8281_curated
Order: Sphingomonadales (66.67%)
6 5109 bp 62.48 1.00 78.86
SCNpilot_expt_1000_bf_scaffold_15345_curated
Class: Alphaproteobacteria (66.67%)
6 5658 bp 57.00 1.00 82.45
SCNpilot_expt_1000_bf_scaffold_17274_curated
Species: Sphingobium sp. SYK-6 (66.67%)
6 5559 bp 63.30 1.00 80.79
SCNpilot_expt_1000_bf_scaffold_10690_curated
Species: Sphingobium sp. SYK-6 (83.33%)
6 6711 bp 64.34 1.00 66.79
SCNpilot_expt_1000_bf_scaffold_18364_curated
Order: Sphingomonadales (50%)
6 5478 bp 57.59 1.00 65.33
SCNpilot_expt_1000_bf_scaffold_7464_curated
Species: Sphingobium sp. SYK-6 (83.33%)
6 6188 bp 63.49 1.00 92.11
SCNpilot_expt_1000_bf_scaffold_7274_curated
Class: Alphaproteobacteria (50%)
6 6913 bp 62.52 1.00 84.02
SCNpilot_expt_1000_bf_scaffold_15464_curated
Species: Sphingobium sp. SYK-6 (66.67%)
6 7019 bp 62.23 1.00 73.22
SCNpilot_expt_1000_bf_scaffold_11190_curated
Genus: Sphingobium (50%)
6 5981 bp 65.51 1.00 79.35
SCNpilot_expt_1000_bf_scaffold_16223_curated
Genus: Sphingobium (60%)
6 7216 bp 59.24 1.00 53.17
SCNpilot_expt_1000_bf_scaffold_13728_curated
Species: Sphingobium sp. SYK-6 (50%)
6 5709 bp 62.01 1.00 72.31
SCNpilot_expt_1000_bf_scaffold_4568_curated
Species: Sphingobium sp. SYK-6 (83.33%)
6 6558 bp 68.01 1.00 94.46
SCNpilot_expt_1000_bf_scaffold_20561_curated
Class: Alphaproteobacteria (50%)
6 7658 bp 56.56 1.00 39.21
SCNpilot_expt_1000_bf_scaffold_8840_curated
Species: Sphingobium sp. SYK-6 (83.33%)
6 5636 bp 62.51 1.00 72.98
SCNpilot_expt_1000_bf_scaffold_13604_curated
Species: Sphingobium sp. SYK-6 (66.67%)
6 5804 bp 62.15 1.00 84.61
SCNpilot_expt_1000_bf_scaffold_22427_curated
Species: Sphingobium sp. SYK-6 (100%)
6 5810 bp 62.19 1.00 62.94
SCNpilot_expt_1000_bf_scaffold_6471_curated
Species: Sphingobium sp. SYK-6 (66.67%)
6 6208 bp 60.95 1.00 77.17
SCNpilot_expt_1000_bf_scaffold_15143_curated
Species: Sphingobium sp. SYK-6 (50%)
6 5237 bp 60.11 1.00 68.91
SCNpilot_expt_1000_bf_scaffold_7304_curated
Order: Caulobacterales (50%)
6 6104 bp 65.20 1.00 90.24
SCNpilot_expt_1000_bf_scaffold_18306_curated
Genus: Novosphingobium (50%)
6 5511 bp 62.08 1.00 72.56
SCNpilot_expt_1000_bf_scaffold_12371_curated
Species: Sphingobium sp. SYK-6 (66.67%)
6 6147 bp 64.11 1.00 84.19
SCNpilot_expt_1000_bf_scaffold_15557_curated
Species: Sphingobium sp. SYK-6 (50%)
6 4695 bp 66.47 1.00 91.25
SCNpilot_expt_1000_bf_scaffold_4809_curated
Species: Sphingobium sp. SYK-6 (66.67%)
6 6330 bp 67.41 1.00 90.57
SCNpilot_expt_1000_bf_scaffold_12076_curated
Species: Sphingobium sp. SYK-6 (50%)
6 5933 bp 59.46 1.00 75.09
SCNpilot_expt_1000_bf_scaffold_12684_curated
Species: Sphingobium sp. SYK-6 (83.33%)
6 5220 bp 63.35 1.00 85.46
SCNpilot_expt_1000_bf_scaffold_9529_curated
Order: Sphingomonadales (50%)
6 5856 bp 62.65 1.00 69.36
SCNpilot_expt_1000_bf_scaffold_15009_curated
Species: Sphingobium sp. SYK-6 (83.33%)
6 4888 bp 62.79 1.00 77.64
SCNpilot_expt_1000_bf_scaffold_3578_curated
Genus: Sphingobium (50%)
6 8124 bp 63.39 1.00 87.70
SCNpilot_expt_1000_bf_scaffold_7746_curated
Order: Sphingomonadales (50%)
6 7744 bp 66.49 1.00 91.97
SCNpilot_expt_1000_bf_scaffold_16060_curated
Order: Sphingomonadales (80%)
6 6073 bp 61.42 1.00 69.36
SCNpilot_expt_1000_bf_scaffold_17737_curated
Genus: Devosia (66.67%)
6 6284 bp 59.75 1.00 66.98
SCNpilot_expt_1000_bf_scaffold_6038_curated
Species: Sphingobium sp. SYK-6 (83.33%)
6 6406 bp 64.27 1.00 89.21
SCNpilot_expt_1000_bf_scaffold_12488_curated
Order: Sphingomonadales (60%)
5 6196 bp 63.48 1.00 68.12
SCNpilot_expt_1000_bf_scaffold_13033_curated
Species: Sphingobium sp. SYK-6 (60%)
5 5137 bp 65.21 1.00 60.27
SCNpilot_expt_1000_bf_scaffold_24490_curated
Species: Sphingobium sp. SYK-6 (60%)
5 5448 bp 56.77 1.00 61.29
SCNpilot_expt_1000_bf_scaffold_9506_curated
Order: Sphingomonadales (60%)
5 5951 bp 59.49 1.00 75.72
SCNpilot_expt_1000_bf_scaffold_27362_curated
Order: Sphingomonadales (60%)
5 5688 bp 58.70 1.00 52.58
SCNpilot_expt_1000_bf_scaffold_16159_curated
Species: Phenylobacterium zucineum (60%)
5 6159 bp 65.63 1.00 73.02
SCNpilot_expt_1000_bf_scaffold_18305_curated
Genus: Sphingobium (60%)
5 5176 bp 60.47 1.00 57.96
SCNpilot_expt_1000_bf_scaffold_21734_curated
Species: Sphingobium sp. SYK-6 (50%)
4 5727 bp 58.37 1.00 55.26
SCNpilot_expt_1000_bf_scaffold_14439_curated
Species: Sphingobium sp. SYK-6 (50%)
4 5631 bp 61.32 1.00 54.29
SCNpilot_expt_1000_bf_scaffold_8656_curated
Species: Sphingobium sp. SYK-6 (75%)
4 5332 bp 63.93 1.00 86.53
SCNpilot_expt_1000_bf_scaffold_8507_curated
Order: Sphingomonadales (100%)
4 5648 bp 65.33 1.00 82.86
SCNpilot_expt_1000_bf_scaffold_13118_curated
Genus: Sphingobium (66.67%)
3 4956 bp 59.69 1.00 79.54
SCNpilot_expt_1000_bf_scaffold_5549_curated
Order: Sphingomonadales (100%)
3 5991 bp 64.91 1.00 86.03
Displaying items 201-250 of 250 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.