ggKbase home page
Advanced Search
Search Help

CN-SCN_Erythrobacter_14x

CN-SCN_Sphingomonadales_62_14
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 13.72 Longest contig: 128.95 Kbp Bin length: 2.80 Mbp GC content: 61.96 %
Contigs count: 136 Features count: 2751 rRNAs count: 0 tRNAs count: 36

Genome completeness

partial RP 39 / 55 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1

Description

Partial 38

Displaying items 51-100 of 136 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4820 ERY14_67
Order: Sphingomonadales (63.64%)
11 12218 bp 59.78 12.77 89.57
cn_combo_scaffold_4732 ERY14_66
Order: Sphingomonadales (100%)
12 12410 bp 63.31 14.50 91.43
cn_combo_scaffold_6881 ERY14_114
Species: Erythrobacter litoralis (100%)
15 12866 bp 62.68 12.96 96.72
cn_combo_scaffold_4569 ERY14_109 17 12883 bp 61.30 13.58 83.01
cn_combo_scaffold_4490 ERY14_64
Order: Sphingomonadales (100%)
14 13094 bp 62.56 13.55 92.36
cn_combo_scaffold_4454 ERY14_63
Order: Sphingomonadales (92.31%)
13 13183 bp 61.38 14.19 93.12
cn_combo_scaffold_4450 ERY14_62
Order: Sphingomonadales (83.33%)
12 13194 bp 62.16 12.54 91.68
cn_combo_scaffold_4412 ERY14_61
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
12 13295 bp 61.23 12.85 97.55
cn_combo_scaffold_4353 ERY14_59
Order: Sphingomonadales (93.33%)
15 13446 bp 60.93 14.50 92.24
cn_combo_scaffold_4796 ERY14_137
Genus: Sphingobium (53.85%)
13 13719 bp 62.62 12.98 94.80
cn_combo_scaffold_4133 ERY14_136
Species: Erythrobacter litoralis (70%)
10 14160 bp 60.70 12.90 95.87
cn_combo_scaffold_4693 ERY14_65
Order: Sphingomonadales (100%)
15 14217 bp 60.55 12.76 92.76
cn_combo_scaffold_4060 ERY14_56
Order: Sphingomonadales (100%)
16 14407 bp 62.41 13.10 94.54
cn_combo_scaffold_5459 ERY14_75
Order: Sphingomonadales (100%)
12 14539 bp 62.71 12.88 90.85
cn_combo_scaffold_3952 ERY14_55
Order: Sphingomonadales (92.86%)
14 14769 bp 63.02 13.51 93.99
cn_combo_scaffold_3864 ERY14_54
Genus: Erythrobacter (50%)
12 15029 bp 62.12 13.75 89.99
cn_combo_scaffold_3751 ERY14_127
Order: Sphingomonadales (76.92%)
13 15402 bp 60.95 13.78 82.59
cn_combo_scaffold_3621 ERY14_126
Order: Sphingomonadales (90%)
10 15883 bp 61.25 13.24 86.38
cn_combo_scaffold_3483 ERY14_52
Order: Sphingomonadales (93.75%)
16 16497 bp 62.29 13.38 92.08
cn_combo_scaffold_7053 ERY14_83
Order: Sphingomonadales (89.47%)
19 16637 bp 62.10 13.12 92.40
cn_combo_scaffold_5934 ERY14_78
Order: Sphingomonadales (80%)
15 17195 bp 60.22 13.37 87.61
cn_combo_scaffold_3336 ERY14_50
Order: Sphingomonadales (84.62%)
13 17214 bp 60.25 13.26 92.80
cn_combo_scaffold_5475 ERY14_76
Order: Sphingomonadales (66.67%)
12 17355 bp 60.71 13.94 84.44
cn_combo_scaffold_3253 ERY14_49
Order: Sphingomonadales (92.86%)
14 17583 bp 60.76 14.60 92.70
cn_combo_scaffold_3234 ERY14_48
Order: Sphingomonadales (81.82%)
22 17676 bp 61.76 14.38 87.79
cn_combo_scaffold_3177 ERY14_47
Genus: Erythrobacter (52.94%)
17 17951 bp 62.63 13.88 95.73
cn_combo_scaffold_3160 ERY14_46
Order: Sphingomonadales (83.33%)
18 18064 bp 61.60 14.10 94.30
cn_combo_scaffold_3125 ERY14_45
Order: Sphingomonadales (94.12%)
17 18213 bp 63.75 12.50 95.96
cn_combo_scaffold_3112 ERY14_111
Species: Erythrobacter litoralis (75%)
24 18310 bp 62.41 13.50 94.54
cn_combo_scaffold_3078 ERY14_43
Order: Sphingomonadales (90%)
20 18466 bp 59.93 13.66 88.98
cn_combo_scaffold_3059 ERY14_42
Order: Sphingomonadales (95.24%)
21 18569 bp 61.98 13.43 90.36
cn_combo_scaffold_4393 ERY14_60
Order: Sphingomonadales (95%)
20 20410 bp 62.47 14.85 89.37
cn_combo_scaffold_2726 ERY14_39
Species: BJP_08E140C01_10KDA_Sphingomonadales_62_47 (77.78%)
18 20535 bp 61.41 14.37 93.65
cn_combo_scaffold_2639 ERY14_37
Order: Sphingomonadales (88.89%)
18 21176 bp 59.50 12.95 90.87
cn_combo_scaffold_2637 ERY14_124
Order: Sphingomonadales (86.96%)
23 21193 bp 61.61 14.02 87.45
cn_combo_scaffold_2626 ERY14_36
Order: Sphingomonadales (93.75%)
16 21259 bp 62.53 12.57 95.37
cn_combo_scaffold_2581 ERY14_35
Order: Sphingomonadales (96%)
25 21544 bp 65.76 13.55 96.72
cn_combo_scaffold_2551 ERY14_123
Order: Sphingomonadales (80%)
20 21779 bp 59.16 14.08 90.25
cn_combo_scaffold_2532 ERY14_122
Order: Sphingomonadales (84.21%)
19 21918 bp 62.92 13.82 91.77
cn_combo_scaffold_2432 ERY14_34
Order: Sphingomonadales (92.59%)
27 22606 bp 62.02 13.58 92.68
cn_combo_scaffold_2399 ERY14_33
Order: Sphingomonadales (100%)
27 22903 bp 63.18 14.26 92.08
cn_combo_scaffold_2391 ERY14_32
Order: Sphingomonadales (89.47%)
19 22990 bp 61.72 13.75 90.35
cn_combo_scaffold_2327 ERY14_31
Order: Sphingomonadales (96.15%)
26 23511 bp 60.81 13.16 91.85
cn_combo_scaffold_2292 ERY14_121
Order: Sphingomonadales (89.47%)
19 23810 bp 61.73 13.69 90.14
cn_combo_scaffold_2265 ERY14_30
Order: Sphingomonadales (84.62%)
26 24127 bp 61.85 14.56 87.61
cn_combo_scaffold_2230 ERY14_29
Species: BJP_IG2102_Porphyrobacter_62_18 (56%)
25 24559 bp 61.07 13.53 88.27
cn_combo_scaffold_2799 ERY14_40
Order: Sphingomonadales (97.3%)
37 26175 bp 62.36 13.68 93.46
cn_combo_scaffold_2078 ERY14_27
Order: Sphingomonadales (89.29%)
28 26336 bp 62.19 15.06 89.09
cn_combo_scaffold_2062 ERY14_26
Order: Sphingomonadales (85.19%)
27 26555 bp 61.59 13.56 88.25
cn_combo_scaffold_4105 ERY14_57
Order: Sphingomonadales (90.63%)
32 26559 bp 61.18 13.07 94.33
Displaying items 51-100 of 136 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.