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berkeley_reactor_200306_biofilm_scaffold_4471

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_4471_1
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..710
DNA (708bp) protein (236aa)
ABC transporter related n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5Q2_OCHA4
ABC transporter {ECO:0000313|EMBL:KJC50500.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_4471_2
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(951..1736)
DNA (786bp) protein (262aa)
Transcriptional regulator, GntR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FC7_MESSB
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABG63898.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
berkeley_reactor_200306_biofilm_scaffold_4471_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1733..2899)
DNA (1167bp) protein (389aa)
PrpF family protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IXZ3_ACIMA
PrpF family protein
Tax=GWA2_Rokubacteria_70_23_curated
berkeley_reactor_200306_biofilm_scaffold_4471_4
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2899..5589)
DNA (2691bp) protein (897aa)
acnA3; aconitate hydratase 1 (EC:4.2.1.3)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
Aconitate hydratase 1 n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LFG9_RALME
berkeley_reactor_200306_biofilm_scaffold_4471_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5752..6678
DNA (927bp) protein (309aa)
2,3-dimethylmalate lyase (EC:4.1.3.32)
2,3-dimethylmalate lyase {ECO:0000313|EMBL:ABG63897.1}; EC=4.1.3.32 {ECO:0000313|EMBL:ABG63897.1};; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
2,3-dimethylmalate lyase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FC8_MESSB
berkeley_reactor_200306_biofilm_scaffold_4471_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6714..7709
DNA (996bp) protein (332aa)
Putative substrate-binding component of ABC transporter n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QF75_RHOPT
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIZ48209.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_4471_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7721..8509
DNA (789bp) protein (263aa)
ABC transporter related n=2 Tax=Rhodopseudomonas palustris RepID=B3QF74_RHOPT
ABC transporter ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACE99508.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
berkeley_reactor_200306_biofilm_scaffold_4471_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8519..9400
DNA (882bp) protein (294aa)
ABC transporter, permease n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NBE6_RHOPA
ABC transporter permease {ECO:0000313|EMBL:KIZ35811.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ABC transporter inner membrane protein
berkeley_reactor_200306_biofilm_scaffold_4471_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9668..10387
DNA (720bp) protein (240aa)
Phophonate C-P lyase system transcriptional regulator PhnF, GntR family n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LNP5_DESBD
Uncharacterized protein {ECO:0000313|EMBL:KKB11581.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_4471_10
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10730..11776
DNA (1047bp) protein (349aa)
Ribose ABC transporter ribose-binding protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XLD7_9FIRM
periplasmic binding domain protein
Ribose ABC transporter ribose-binding protein {ECO:0000313|EMBL:CDD07137.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
berkeley_reactor_200306_biofilm_scaffold_4471_11

Not on your lists

11837..14365
DNA (2529bp) protein (843aa)
Putative uncharacterized protein n=1 Tax=uncultured prokaryote RepID=H5SKT4_9ZZZZ
branched-chain amino acid transport system / permease component family protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAL56770.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
berkeley_reactor_200306_biofilm_scaffold_4471_12
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14374..15357
DNA (984bp) protein (328aa)
Sugar ABC transporter permease protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WCM5_9FIRM
branched-chain amino acid transport system / permease component family protein
Sugar ABC transporter permease protein {ECO:0000313|EMBL:CDD07140.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
berkeley_reactor_200306_biofilm_scaffold_4471_13
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15370..16089
DNA (720bp) protein (240aa)
Putative amidohydrolase 2 n=1 Tax=Dorea sp. CAG:317 RepID=R6WT32_9FIRM
amidohydrolase family protein
Putative amidohydrolase 2 {ECO:0000313|EMBL:CDD07141.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
berkeley_reactor_200306_biofilm_scaffold_4471_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16141..17100
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI0003811A2A
putative sugar-binding domain protein
Uncharacterized protein {ECO:0000313|EMBL:KJB93085.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
berkeley_reactor_200306_biofilm_scaffold_4471_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17568..18629
DNA (1062bp) protein (354aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9U9_STAND
periplasmic protein/LacI transcriptional regulator
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ADH88875.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_4471_16
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18626..20251
DNA (1626bp) protein (542aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9U8_STAND
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADH88874.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_4471_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20248..21225
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI0003819C75
ABC transporter permease {ECO:0000313|EMBL:KJC57107.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_4471_18
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21218..22225
DNA (1008bp) protein (336aa)
Inner-membrane translocator n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9U6_STAND
ABC transporter permease {ECO:0000313|EMBL:KJC42303.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_4471_19
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22236..23075
DNA (840bp) protein (280aa)
Molybdopterin dehydrogenase FAD-binding protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9U5_STAND
FAD-binding molybdopterin dehydrogenase protein
Molybdopterin dehydrogenase FAD-binding protein {ECO:0000313|EMBL:ADH88871.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_4471_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23072..23524
DNA (453bp) protein (151aa)
(2Fe-2S)-binding domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9U4_STAND
Xanthine dehydrogenase, Fe-S binding subunit {ECO:0000313|EMBL:CDX32178.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
(2Fe-2S)-binding domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_4471_21
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23536..25884
DNA (2349bp) protein (783aa)
Two-component system, chemotaxis family, sensor kinase CheA n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HIS1_9BRAD
Two-component system, chemotaxis family, sensor kinase CheA {ECO:0000313|EMBL:ERF84703.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein
berkeley_reactor_200306_biofilm_scaffold_4471_22
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26069..26725
DNA (657bp) protein (219aa)
ATP-dependent Clp protease, ATP-binding subunit ClpA n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R946_PHEZH
clpA; ATP-dependent Clp protease, ATP-binding subunit ClpA
ATP-dependent Clp protease, ATP-binding subunit ClpA {ECO:0000313|EMBL:ACG77716.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
berkeley_reactor_200306_biofilm_scaffold_4471_23
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26808..27851)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXU1_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48960.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
berkeley_reactor_200306_biofilm_scaffold_4471_24
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28036..28422)
DNA (387bp) protein (129aa)
ester cyclase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00035C4EA8
Ester cyclase {ECO:0000313|EMBL:ESW86331.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_4471_25
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28587..30551)
DNA (1965bp) protein (655aa)
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9V0_STAND
putative 5-oxoprolinase
Putative 5-oxoprolinase {ECO:0000313|EMBL:AHK46390.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_4471_26
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(30557..32581)
DNA (2025bp) protein (675aa)
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9V1_STAND
HyuA protein {ECO:0000313|EMBL:BAQ50024.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hydantoinase/oxoprolinase family protein
berkeley_reactor_200306_biofilm_scaffold_4471_27
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32687..33661)
DNA (975bp) protein (325aa)
Transcriptional regulator, AraC family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9V3_STAND
AraC protein {ECO:0000313|EMBL:BAQ50023.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_4471_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33912..34898)
DNA (987bp) protein (329aa)
urea amidolyase-like protein (EC:6.3.4.6)
Urea amidolyase related protein {ECO:0000313|EMBL:ADH88885.1}; EC=6.3.4.6 {ECO:0000313|EMBL:ADH88885.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Urea amidolyase related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9V9_STAND
berkeley_reactor_200306_biofilm_scaffold_4471_29
bacterium YEK0313, Bacteria

Not on your lists

comp(34891..35757)
DNA (867bp) protein (289aa)
Urea amidolyase/ putative allophanate hydrolase subunit 1 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U7B2_9RHIZ
Kinase A inhibitor {ECO:0000313|EMBL:CEJ13878.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
urea amidohydrolyase
berkeley_reactor_200306_biofilm_scaffold_4471_30
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35787..37208)
DNA (1422bp) protein (474aa)
Carbamoyl-phosphate synthase L chain ATP-binding protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9V7_STAND
AccC protein {ECO:0000313|EMBL:BAQ50020.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
carbamoyl-phosphate synthase L chain ATP-binding protein
Displaying items 1-30 of 60 in total

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