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berkeley_reactor_200306_biofilm_scaffold_37123

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_37123_1
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

220..1200
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGP8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX68240.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37123_2
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1282..1899
DNA (618bp) protein (206aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
DNA-3-methyladenine glycosylase I n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8END9_METSB
Tag protein {ECO:0000313|EMBL:BAQ46487.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
berkeley_reactor_200306_biofilm_scaffold_37123_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1899..2501
DNA (603bp) protein (201aa)
Metal-dependent phosphohydrolase HD sub domain n=2 Tax=Methylobacterium RepID=B0UPM8_METS4
Metal dependent phosphohydrolase {ECO:0000313|EMBL:KFC66889.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
metal-dependent phosphohydrolase
berkeley_reactor_200306_biofilm_scaffold_37123_4
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2510..3016
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPM7_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA20453.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_37123_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3067..3930)
DNA (864bp) protein (288aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4)
Hydroxymethylglutaryl-CoA lyase, mitochondrial n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI28_9RHIZ
Isopropylmalate/homocitrate/citramalate synthase {ECO:0000313|EMBL:CDX32132.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
berkeley_reactor_200306_biofilm_scaffold_37123_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3930..5426)
DNA (1497bp) protein (499aa)
Ribose import ATP-binding protein rbsA n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFB7_9RHIZ
Fused D-allose transporter subunits of ABC superfamily: ATP-binding components {ECO:0000313|EMBL:CDX14115.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_37123_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5423..6502)
DNA (1080bp) protein (360aa)
Strictosidine synthase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIM4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX14117.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37123_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6502..8613)
DNA (2112bp) protein (704aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FMC5_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:CDX14119.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_37123_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8626..9642)
DNA (1017bp) protein (339aa)
ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI08_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDX14121.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_37123_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9672..10682)
DNA (1011bp) protein (337aa)
Putative ABC transporter (Permease protein) n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI30_9RHIZ
ABC transporter permease protein {ECO:0000313|EMBL:CDX14124.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_37123_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10687..12051)
DNA (1365bp) protein (455aa)
3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219};; EC=1.1.1.88 {ECO:0000256|RuleBase:RU361219};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Hydroxymethylglutaryl-CoA reductase, degradative n=1 Tax=Rhizobium sp. CF080 RepID=J2K3H2_9RHIZ
mvaA; hydroxymethylglutaryl-CoA reductase, degradative
berkeley_reactor_200306_biofilm_scaffold_37123_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12250..13650
DNA (1401bp) protein (467aa)
Transcriptional regulator with HTH domain and aminotransferase domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CML0_9RHIZ
Transcriptional regulator with HTH domain and aminotransferase domain-containing protein {ECO:0000313|EMBL:CDX14129.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_37123_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13688..14563)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y550_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH13101.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37123_14
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14563..15198)
DNA (636bp) protein (212aa)
UPI0003CE4B79 related cluster n=1 Tax=unknown RepID=UPI0003CE4B79
Uncharacterized protein {ECO:0000313|EMBL:ESY66594.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37123_15
unknown

Not on your lists

comp(15366..15566)
DNA (201bp) protein (67aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_37123_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15662..18472)
DNA (2811bp) protein (937aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003724E84
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42851.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
berkeley_reactor_200306_biofilm_scaffold_37123_17
bacterium YEK0313, Bacteria

Not on your lists

18609..19718
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0GB03_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CEJ12046.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37123_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20118..20576
DNA (459bp) protein (153aa)
Excisionase/Xis, DNA-binding n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20Y39_RHOPB
excisionase/Xis, DNA-binding
Excisionase/Xis, DNA-binding {ECO:0000313|EMBL:ABD89947.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
berkeley_reactor_200306_biofilm_scaffold_37123_19
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20793..21071
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BXY6_SINMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG06472.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
berkeley_reactor_200306_biofilm_scaffold_37123_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21380..22849)
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003651980
Cell wall hydrolase, SleB {ECO:0000313|EMBL:KFC73388.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cell wall hydrolase SleB
berkeley_reactor_200306_biofilm_scaffold_37123_21
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23068..24531
DNA (1464bp) protein (488aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EIJ3_METSB
peptidase C14 caspase catalytic subunit p20
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ACK51312.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_37123_22
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24605..25504
DNA (900bp) protein (300aa)
Phage SPO1 DNA polymerase-related protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IEI0_AZOC5
phage SPO1 DNA polymerase-related protein
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:BAF89492.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_37123_23
bacterium YEK0313, Bacteria

Not on your lists

25564..26466
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3P7_STAND
Putative neutral zinc metallopeptidase {ECO:0000313|EMBL:CEJ15622.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37123_24
unknown

Not on your lists

comp(26447..27322)
DNA (876bp) protein (292aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_37123_25
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27365..27874)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361B383
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ71777.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_37123_26
bacterium YEK0313, Bacteria

Not on your lists

28021..29151
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003709043
Radical SAM superfamily protein {ECO:0000313|EMBL:CEJ14000.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
radical SAM protein
berkeley_reactor_200306_biofilm_scaffold_37123_27
unknown

Not on your lists

comp(29198..29857)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037D8AD1
berkeley_reactor_200306_biofilm_scaffold_37123_28
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30052..30645
DNA (594bp) protein (198aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
Ribonuclease HII n=1 Tax=Rhizobium sp. CF080 RepID=J2QAQ0_9RHIZ
Ribonuclease HII
berkeley_reactor_200306_biofilm_scaffold_37123_29
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30792..31967
DNA (1176bp) protein (392aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
DNA methylase N-4/N-6 domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QKA9_METTR
DNA methylase N-4/N-6 domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_37123_30
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31971..33041)
DNA (1071bp) protein (357aa)
A/G-specific adenine glycosylase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IQT7_METNO
A/G-specific adenine glycosylase
A/G-specific adenine glycosylase {ECO:0000313|EMBL:ACL62382.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Displaying items 1-30 of 35 in total

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