ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_46954

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_46954_1
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..127
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RJV0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:GAN82114.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_46954_2
unknown

Not on your lists

522..737
DNA (216bp) protein (72aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_46954_3
unknown

Not on your lists

comp(1137..2345)
DNA (1209bp) protein (403aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_46954_4
Actinobacillus minor, Actinobacillus, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2424..3749)
DNA (1326bp) protein (442aa)
Capsule polysaccharide export inner-membrane protein n=1 Tax=Actinobacillus minor NM305 RepID=C5S344_9PAST
Capsule polysaccharide export inner-membrane protein {ECO:0000313|EMBL:EER46673.1}; TaxID=637911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus.;" source="Actinobacillus minor NM305.;"
Capsule polysaccharide export protein
berkeley_reactor_200306_biofilm_scaffold_46954_5
Desulfovibrio piger, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3706..4353)
DNA (648bp) protein (216aa)
ABC transporter, ATP-binding protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WU58_9DELT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEB33475.1}; TaxID=411464 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio piger ATCC 29098.;"
putative RkpS/KpsT/CtrD/VexC-like capsular polysaccharide export, ATP-binding component
berkeley_reactor_200306_biofilm_scaffold_46954_6
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4573..5361)
DNA (789bp) protein (263aa)
Putative cell surface polysaccharide export ABC-2 transporter permease protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2C9U5_9RHOB
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
berkeley_reactor_200306_biofilm_scaffold_46954_7
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5457..6539)
DNA (1083bp) protein (361aa)
Capsule polysaccharide modification protein lipA n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AFE4_RHIFH
Capsule polysaccharide biosynthesis protein {ECO:0000313|EMBL:KEC80836.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
lipA; Capsule polysaccharide modification protein lipA
berkeley_reactor_200306_biofilm_scaffold_46954_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6576..7820)
DNA (1245bp) protein (415aa)
N-acyl-D-glucosamine 2-epimerase (EC:5.1.3.14)
mannose-6-phosphate isomerase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003615404
N-acyl-D-glucosamine 2-epimerase {ECO:0000313|EMBL:EJL25385.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
berkeley_reactor_200306_biofilm_scaffold_46954_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8249..10414)
DNA (2166bp) protein (722aa)
Capsule polysaccharide modification protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JK02_AGRRK
capsule polysaccharide modification protein
Capsule polysaccharide modification protein {ECO:0000313|EMBL:ACM30244.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
berkeley_reactor_200306_biofilm_scaffold_46954_10
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10470..11885)
DNA (1416bp) protein (472aa)
Capsule polysaccharide biosynthesis protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LZQ9_METRJ
capsule polysaccharide biosynthesis protein
Capsule polysaccharide biosynthesis protein {ECO:0000313|EMBL:ACB22957.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
berkeley_reactor_200306_biofilm_scaffold_46954_11
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12542..13543)
DNA (1002bp) protein (334aa)
UDP-glucuronate 5'-epimerase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I5C6_AZOC5
UDP-glucuronate 5-epimerase {ECO:0000313|EMBL:KKC34558.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
UDP-glucuronate 5'-epimerase
berkeley_reactor_200306_biofilm_scaffold_46954_12
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13592..14923)
DNA (1332bp) protein (444aa)
Multi antimicrobial extrusion protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IK13_AZOC5
matE; multi anti extrusion protein
Multi antimicrobial extrusion protein {ECO:0000313|EMBL:BAF86384.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_46954_trna_1
unknown

Not on your lists

15099..15171
DNA (73bp)
transferRNA Thr
berkeley_reactor_200306_biofilm_scaffold_46954_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15209..15484)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Rhodopseudomonas palustris RepID=Q6NBM7_RHOPA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42589.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
berkeley_reactor_200306_biofilm_scaffold_46954_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15544..17163)
DNA (1620bp) protein (540aa)
ATP-dependent DNA ligase n=1 Tax=Xanthobacteraceae RepID=UPI0003739A0A
ATP dependent DNA ligase
ATP dependent DNA ligase {ECO:0000313|EMBL:ADH87405.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_46954_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17160..18095)
DNA (936bp) protein (312aa)
Putative mRNA 3-end processing factor n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZZ2_STAND
mRNA 3-end processing factor
Putative mRNA 3-end processing factor {ECO:0000313|EMBL:ADH87406.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_46954_16
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18105..19187
DNA (1083bp) protein (361aa)
Methyltransferase type 12 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8INK5_METNO
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ACL56531.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_46954_17
bacterium YEK0313, Bacteria

Not on your lists

19126..21813
DNA (2688bp) protein (896aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003620B1B
ATP-dependent RNA helicase DeaD {ECO:0000313|EMBL:CEJ16212.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
lhr; putative ATP-dependent DNA helicase
berkeley_reactor_200306_biofilm_scaffold_46954_18
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21788..22504
DNA (717bp) protein (239aa)
Putative phosphoesterase, ICC n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YCE2_9BRAD
Putative phosphoesterase, ICC {ECO:0000313|EMBL:EHR00436.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_46954_19
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22507..23274)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030EDD75
Membrane protein {ECO:0000313|EMBL:KJC33881.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_46954_20
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23271..24191)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F024CF
Conserved domain protein, putative {ECO:0000313|EMBL:EEE47784.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
permease
berkeley_reactor_200306_biofilm_scaffold_46954_21
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24302..24988)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037484FC
Sel1 domain-containing protein
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:ACA17508.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Displaying 22 items

View Taxonomy