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SCNpilot_P_inoc_Myxococcales_68_7

In projects: SCNpilot_P_inoc

Consensus taxonomy: Myxococcales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 6.83 Longest contig: 295.41 Kbp Bin length: 11.84 Mbp GC content: 68.37 %
Contigs count: 421 Features count: 10148 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Displaying items 101-150 of 421 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_1892
Domain: Bacteria (60%)
20 20930 bp 67.84 6.61 91.43
scnpilot_p_inoc_scaffold_400
Class: Deltaproteobacteria (51.43%)
70 87368 bp 67.58 7.37 91.41
scnpilot_p_inoc_scaffold_910
Order: Myxococcales (52.38%)
42 47279 bp 69.34 5.96 91.37
scnpilot_p_inoc_scaffold_1527
Order: Myxococcales (69.23%)
13 19530 bp 67.41 6.87 91.32
scnpilot_p_inoc_scaffold_450
Phylum: Proteobacteria (53.25%)
77 78753 bp 68.52 6.93 91.26
scnpilot_p_inoc_scaffold_1416
Order: Myxococcales (52.63%)
19 21133 bp 69.16 6.28 91.21
scnpilot_p_inoc_scaffold_925
Order: Myxococcales (72.73%)
33 35444 bp 69.33 6.47 91.17
scnpilot_p_inoc_scaffold_33772
Species: Stigmatella aurantiaca (100%)
2 1873 bp 66.84 7.13 91.14
scnpilot_p_inoc_scaffold_1756
Class: Deltaproteobacteria (52.94%)
17 16997 bp 67.45 6.69 91.13
scnpilot_p_inoc_scaffold_1264
Order: Myxococcales (77.27%)
22 23835 bp 70.12 6.22 91.11
scnpilot_p_inoc_scaffold_3329
Genus: Myxococcus (50%)
8 10027 bp 68.72 5.94 91.10
scnpilot_p_inoc_scaffold_1836
Order: Myxococcales (50%)
12 16264 bp 68.65 6.16 91.10
scnpilot_p_inoc_scaffold_4202
Order: Myxococcales (50%)
12 8517 bp 69.25 6.11 91.09
scnpilot_p_inoc_scaffold_7256 7 5880 bp 70.29 6.43 91.07
scnpilot_p_inoc_scaffold_3301
Order: Myxococcales (75%)
8 10107 bp 66.88 7.36 91.07
scnpilot_p_inoc_scaffold_889
Order: Myxococcales (70%)
30 36196 bp 69.25 6.02 91.04
scnpilot_p_inoc_scaffold_250
Order: Myxococcales (53.21%)
109 132571 bp 68.65 7.25 90.97
scnpilot_p_inoc_scaffold_710
Order: Myxococcales (52.38%)
42 48081 bp 68.30 7.43 90.92
scnpilot_p_inoc_scaffold_1081
Order: Myxococcales (60.87%)
23 28592 bp 69.62 6.18 90.90
scnpilot_p_inoc_scaffold_1089
Order: Myxococcales (52.38%)
21 28343 bp 68.43 7.45 90.89
scnpilot_p_inoc_scaffold_1126
Order: Myxococcales (61.54%)
26 27108 bp 68.86 6.33 90.88
scnpilot_p_inoc_scaffold_538
Order: Myxococcales (61.02%)
59 65447 bp 68.49 6.71 90.88
scnpilot_p_inoc_scaffold_2715
Order: Myxococcales (64.29%)
14 11701 bp 67.38 6.58 90.79
scnpilot_p_inoc_scaffold_1792
Order: Myxococcales (71.43%)
14 16620 bp 68.16 6.48 90.78
scnpilot_p_inoc_scaffold_2812
Order: Myxococcales (76.92%)
13 11356 bp 69.20 6.82 90.77
scnpilot_p_inoc_scaffold_11186
Phylum: Proteobacteria (66.67%)
3 4331 bp 67.95 5.92 90.74
scnpilot_p_inoc_scaffold_1796
Species: Sorangium cellulosum (57.14%)
28 16597 bp 66.68 7.99 90.72
scnpilot_p_inoc_scaffold_1601
Domain: Bacteria (60%)
30 28721 bp 69.76 6.77 90.72
scnpilot_p_inoc_scaffold_811
Order: Myxococcales (50%)
38 40360 bp 68.27 6.98 90.71
scnpilot_p_inoc_scaffold_5161
Phylum: Proteobacteria (62.5%)
8 7435 bp 69.48 5.29 90.67
scnpilot_p_inoc_scaffold_2302
Species: Sorangium cellulosum (54.55%)
11 13330 bp 70.40 6.25 90.65
scnpilot_p_inoc_scaffold_688
Order: Myxococcales (53.49%)
43 49423 bp 68.55 6.52 90.61
scnpilot_p_inoc_scaffold_2108
Order: Myxococcales (59.38%)
32 32534 bp 69.30 6.26 90.60
scnpilot_p_inoc_scaffold_7009
Species: Sorangium cellulosum (57.14%)
7 6018 bp 67.25 6.48 90.58
scnpilot_p_inoc_scaffold_259
Phylum: Proteobacteria (60.69%)
145 159048 bp 68.24 7.09 90.57
scnpilot_p_inoc_scaffold_10836
Domain: Bacteria (60%)
5 4433 bp 68.89 5.28 90.48
scnpilot_p_inoc_scaffold_1325
Order: Myxococcales (63.16%)
57 65792 bp 68.35 6.97 90.47
scnpilot_p_inoc_scaffold_913
Order: Myxococcales (58.7%)
46 60157 bp 67.58 7.00 90.46
scnpilot_p_inoc_scaffold_845
Order: Myxococcales (73.08%)
52 65423 bp 69.16 6.89 90.43
scnpilot_p_inoc_scaffold_494
Order: Myxococcales (52.54%)
59 72669 bp 67.83 6.22 90.42
scnpilot_p_inoc_scaffold_1048
Order: Myxococcales (72.73%)
22 29518 bp 69.39 6.34 90.40
scnpilot_p_inoc_scaffold_441
Order: Myxococcales (65.67%)
67 79742 bp 68.67 6.31 90.39
scnpilot_p_inoc_scaffold_496
Order: Myxococcales (52%)
75 83120 bp 68.70 6.96 90.37
scnpilot_p_inoc_scaffold_3412
Order: Myxococcales (75%)
12 9833 bp 67.83 7.63 90.34
scnpilot_p_inoc_scaffold_4145
Species: Sorangium cellulosum (71.43%)
7 8582 bp 67.83 5.63 90.33
scnpilot_p_inoc_scaffold_766
Order: Myxococcales (62.16%)
37 45691 bp 68.33 7.45 90.33
scnpilot_p_inoc_scaffold_1153
Order: Myxococcales (70.83%)
24 26204 bp 69.06 6.95 90.31
scnpilot_p_inoc_scaffold_2592
Order: Myxococcales (53.85%)
13 12149 bp 69.04 6.48 90.30
scnpilot_p_inoc_scaffold_679
Order: Myxococcales (64.1%)
39 49961 bp 68.31 7.27 90.24
scnpilot_p_inoc_scaffold_549
Order: Myxococcales (67.92%)
53 63852 bp 68.46 7.31 90.22
Displaying items 101-150 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.