ggKbase home page

scnpilot_p_inoc_scaffold_40

Search features with annotation key words

Displaying items 211-240 of 299 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_40_211
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

239762..241180
DNA (1419bp) protein (473aa)
ABC transporter-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSP1_9GAMM
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF08077.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacteri
scnpilot_p_inoc_scaffold_40_212
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

241177..244338
DNA (3162bp) protein (1054aa)
Glycosyl transferase family 2 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H3G6_GLUDA rbh
glycosyl transferase rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACI52729.1}; Putative glycosyl transferase {ECO:0000313|EMBL:CAP57314.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospir
scnpilot_p_inoc_scaffold_40_213
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

244400..246469
DNA (2070bp) protein (690aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSN4_9GAMM
hypothetical protein Tax=RBG_13_Aminicenantes_62_12_curated
hypothetical protein
scnpilot_p_inoc_scaffold_40_214
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

246715..247686
DNA (972bp) protein (324aa)
Radical SAM domain protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S9R0_9FLAO
radical SAM protein Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
radical SAM protein
scnpilot_p_inoc_scaffold_40_215
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(247683..248645)
DNA (963bp) protein (321aa)
Glycosyl transferase family 2 n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MF25_RHOM4
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACY47475.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermu
scnpilot_p_inoc_scaffold_40_216
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(248642..249940)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCW7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97308.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
hypothetical protein
scnpilot_p_inoc_scaffold_40_217
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249897..251408)
DNA (1512bp) protein (504aa)
Mg-protoporphyrin IX monomethyl ester oxidative cyclase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCW8_9GAMM rbh
Mg-protoporphyrin IX monomethyl ester oxidative cyclase {ECO:0000313|EMBL:EIL97309.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanob
Fe-S oxidoreductase
scnpilot_p_inoc_scaffold_40_218
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252009..252659
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCW9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97310.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
serine kinase of the HPr protein, regulates carbohydrate metabolism
scnpilot_p_inoc_scaffold_40_219
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252739..254451
DNA (1713bp) protein (571aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZK8_9GAMM rbh
ABC-type multidrug transport system, ATPase and permease component
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:AGG87846.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae
scnpilot_p_inoc_scaffold_40_220
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(254506..256338)
DNA (1833bp) protein (611aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJJ9_9GAMM
scnpilot_p_inoc_scaffold_40_221
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

256558..257961
DNA (1404bp) protein (468aa)
Lipopolysaccharide synthesis sugar transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRS7_9GAMM rbh
Lipopolysaccharide synthesis sugar transferase {ECO:0000313|EMBL:EIM02169.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;"
sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
scnpilot_p_inoc_scaffold_40_222
unknown

Not on your lists

258032..258460
DNA (429bp) protein (143aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_40_223
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(258474..261002)
DNA (2529bp) protein (843aa)
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00393}; Short=GPAT {ECO:0000256|HAMAP-Rule:MF_00393};; EC=2.3.1.15 {ECO:0000256|HAMAP-Rule:MF_00393};; TaxID=1475481 species="Bacteria;
glycerol-3-phosphate acyltransferase n=1 Tax=Dyella japonica RepID=UPI0002ECB4CE rbh
glycerol-3-phosphate acyltransferase
scnpilot_p_inoc_scaffold_40_224
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(261141..262163)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VR09_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89650.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_p_inoc_scaffold_40_225
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(262210..262917)
DNA (708bp) protein (236aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U8F9_XANAP
scnpilot_p_inoc_scaffold_40_226
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

263010..264038
DNA (1029bp) protein (343aa)
Putative permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8R1_9GAMM rbh
Putative permease {ECO:0000313|EMBL:EIL95852.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115
membrane protein
scnpilot_p_inoc_scaffold_40_227
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

264264..265598
DNA (1335bp) protein (445aa)
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Dyella japonica RepID=UPI00031F49B3 rbh
3-deoxy-D-manno-octulosonic acid transferase
3-deoxy-D-manno-octulosonic acid transferase {ECO:0000313|EMBL:AIF45782.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="D
scnpilot_p_inoc_scaffold_40_228
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265634..267121)
DNA (1488bp) protein (496aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=mine drainage metagenome RepID=T1BM54_9ZZZZ
Type I secretion protein TolC {ECO:0000313|EMBL:GAN45914.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugak
type I secretion protein TolC
scnpilot_p_inoc_scaffold_40_229

Not on your lists

comp(267121..267786)
DNA (666bp) protein (222aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:EQD41331.1}; EC=2.1.1.77 {ECO:0000313|EMBL:EQD41331.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=2 Tax=mine drainage metagenome RepID=T0Z046_9ZZZZ
protein-L-isoaspartate O-methyltransferase
scnpilot_p_inoc_scaffold_40_230
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

268151..268792
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374E972
Uncharacterized protein {ECO:0000313|EMBL:KFN45230.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_40_231
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

269139..271016
DNA (1878bp) protein (626aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidi
Phosphomethylpyrimidine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDG7_9GAMM
thiamine biosynthesis protein ThiC
scnpilot_p_inoc_scaffold_40_232
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

271049..272908
DNA (1860bp) protein (620aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003649A2B rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN41851.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae
hypothetical protein
scnpilot_p_inoc_scaffold_40_233
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

272999..273580
DNA (582bp) protein (194aa)
Bacterioferritin (Cytochrome b1) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDU8_9GAMM
bacterioferritin
Bacterioferritin {ECO:0000313|EMBL:AHX15696.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_p_inoc_scaffold_40_234
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

273851..275425
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037409AA rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN45962.1}; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" sou
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
scnpilot_p_inoc_scaffold_40_235
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

275493..276998
DNA (1506bp) protein (502aa)
Putative aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NM89_9GAMM rbh
Peptidase M28 {ECO:0000313|EMBL:GAN45600.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sedimin
putative aminopeptidase
scnpilot_p_inoc_scaffold_40_236
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

276995..277714
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Plesiomonas shigelloides 302-73 RepID=R8APT7_PLESH
Uncharacterized protein {ECO:0000313|EMBL:KGI78923.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas s
hypothetical protein
scnpilot_p_inoc_scaffold_40_237
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(277719..280394)
DNA (2676bp) protein (892aa)
ATP-dependent RNA helicase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VW24_9GAMM rbh
ATP-dependent RNA helicase {ECO:0000313|EMBL:EIL91415.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacte
RNA helicase
scnpilot_p_inoc_scaffold_40_238
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

280440..281231
DNA (792bp) protein (264aa)
Mg-dependent DNase (EC:3.1.21.-)
Mg-dependent DNase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7P4_9GAMM
Preprotein translocase subunit TatD {ECO:0000313|EMBL:GAN45603.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="M
scnpilot_p_inoc_scaffold_40_239
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(281235..282008)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3DF40
SAM-dependent methyltransferase {ECO:0000313|EMBL:KGI79047.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagr
conserved hypothethical protein, SAM-dependent methyltransferase domain
scnpilot_p_inoc_scaffold_40_240
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(282005..282583)
DNA (579bp) protein (193aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadac
ribosomal large subunit pseudouridine synthase E n=1 Tax=Xanthomonas vasicola RepID=UPI0001CBFFB1
ribosomal large subunit pseudouridine synthase e protein
Displaying items 211-240 of 299 in total

View Taxonomy