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scnpilot_p_inoc_scaffold_114_curated

Search features with annotation key words

Displaying items 1-30 of 199 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_114_curated_1
unknown

Not on your lists

comp(67..159)
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_114_curated_2
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

252..1013
DNA (762bp) protein (254aa)
Uncharacterized protein id=2720759 bin=GWF1_Flavobacteria_32_7 species=Ornithobacterium rhinotracheale genus=Ornithobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
hypothetical protein
Tax=GWF1_Flavobacteria_32_7_curated
scnpilot_p_inoc_scaffold_114_curated_3
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1330..2970)
DNA (1641bp) protein (547aa)
peptidase, S8/S53 family (EC:3.4.21.-)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S6I1_9FLAO
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
scnpilot_p_inoc_scaffold_114_curated_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3043..3972)
DNA (930bp) protein (310aa)
Putative Glycosyl transferase, family 2 n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0NDY9_9EURY
Putative glycosyltransferase {ECO:0000313|EMBL:GAO43713.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
putative glycosyltransferase
scnpilot_p_inoc_scaffold_114_curated_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4031..5590)
DNA (1560bp) protein (520aa)
histidine ammonia-lyase; K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase {ECO:0000313|EMBL:ACU59349.1}; EC=4.3.1.3 {ECO:0000313|EMBL:ACU59349.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Histidine ammonia-lyase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAX7_CHIPD
scnpilot_p_inoc_scaffold_114_curated_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6563..7285
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368F1BB
Biopolymer transporter ExbB {ECO:0000313|EMBL:KIC93294.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
scnpilot_p_inoc_scaffold_114_curated_7
unknown

Not on your lists

comp(8060..8983)
DNA (924bp) protein (308aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_114_curated_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9104..9478
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003700443
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ribosome-binding factor A; K02834 ribosome-binding factor A
scnpilot_p_inoc_scaffold_114_curated_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9541..10767
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003671B5C
Uncharacterized protein {ECO:0000313|EMBL:KIC96117.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
lipoprotein release ABC transporter permease
scnpilot_p_inoc_scaffold_114_curated_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10866..12035
DNA (1170bp) protein (390aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8]
Proline dehydrogenase {ECO:0000313|EMBL:ACU63859.1}; EC=1.5.99.8 {ECO:0000313|EMBL:ACU63859.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Proline dehydrogenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKU9_CHIPD
scnpilot_p_inoc_scaffold_114_curated_11
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12136..12777
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G3E5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI90150.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
scnpilot_p_inoc_scaffold_114_curated_12
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12836..15052
DNA (2217bp) protein (739aa)
PKD domain containing protein id=4096970 bin=GWF2_Bacteroidetes_35_48 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
PKD domain-containing protein
Tax=GWF2_Bacteroidetes_35_48_curated
scnpilot_p_inoc_scaffold_114_curated_13
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15144..16853)
DNA (1710bp) protein (570aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
lysS; lysine--tRNA ligase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=3 Tax=Myroides odoratimimus RepID=H1GP50_9FLAO
scnpilot_p_inoc_scaffold_114_curated_14
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17048..19057
DNA (2010bp) protein (670aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SD37_9FLAO
hypothetical protein
Tax=GWF2_Bacteroidetes_38_335_curated
scnpilot_p_inoc_scaffold_114_curated_15
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19398..20810)
DNA (1413bp) protein (471aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Glutamate--tRNA ligase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KM55_SOLCM
glutamyl-tRNA synthetase
scnpilot_p_inoc_scaffold_114_curated_16
unknown

Not on your lists

comp(20827..21069)
DNA (243bp) protein (81aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_114_curated_17
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21110..21760
DNA (651bp) protein (217aa)
Cell wall-associated hydrolase, invasion-associated protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KLQ3_SOLCM
cell wall-associated hydrolase
Glycoside hydrolase {ECO:0000313|EMBL:AIM38513.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
scnpilot_p_inoc_scaffold_114_curated_18
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21939..23759)
DNA (1821bp) protein (607aa)
PKD id=3877939 bin=GWF2_Bacteroidetes_38_335 species=Methanoplanus limicola genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
hypothetical protein
Tax=GWF2_Bacteroidetes_38_335_curated
scnpilot_p_inoc_scaffold_114_curated_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23872..25767
DNA (1896bp) protein (632aa)
ABC transporter related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMP7_CHIPD
ABC transporter; K15738 ATP-binding cassette, subfamily F, uup
ABC transporter related {ECO:0000313|EMBL:ACU58591.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_114_curated_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25855..27342
DNA (1488bp) protein (496aa)
Polysaccharide biosynthesis protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NTV2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17659.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
polysaccharide biosynthesis protein
scnpilot_p_inoc_scaffold_114_curated_21
unknown

Not on your lists

27344..28066
DNA (723bp) protein (241aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_114_curated_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28098..28493)
DNA (396bp) protein (132aa)
Thioesterase superfamily protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7P9Y2_CHIPD
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ACU59219.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_114_curated_23
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28650..29318)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9D795_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU80514.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
hypothetical protein
scnpilot_p_inoc_scaffold_114_curated_24
unknown

Not on your lists

comp(29407..30063)
DNA (657bp) protein (219aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_114_curated_25
unknown

Not on your lists

comp(30152..30481)
DNA (330bp) protein (110aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_114_curated_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


30809..31171
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU87_CHIPD
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_114_curated_27
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


31274..31786
DNA (513bp) protein (171aa)
30S ribosomal protein S5 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TME0_NIAKG
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
scnpilot_p_inoc_scaffold_114_curated_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


31858..32043
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU89_CHIPD
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_p_inoc_scaffold_114_curated_29
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


32155..32601
DNA (447bp) protein (149aa)
50S ribosomal protein L15 n=1 Tax=Segetibacter koreensis RepID=UPI00037717C3
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_p_inoc_scaffold_114_curated_30
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


32818..34152
DNA (1335bp) protein (445aa)
Protein translocase subunit SecY n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU91_CHIPD
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying items 1-30 of 199 in total

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