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RTP_09252017_15_scaffold_24

Search features with annotation key words

Displaying items 1-30 of 525 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_09252017_15_scaffold_24_1
Polysphondylium pallidum, Polysphondylium, Dictyosteliida, Eukaryota

Not on your lists

2..4963
DNA (4962bp) protein (1654aa)
PREDICTED: uncharacterized protein LOC102033029 n=1 Tax=Geospiza fortis RepID=UPI000395554D
Uncharacterized protein {ECO:0000313|EMBL:EFA84423.1}; TaxID=13642 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium.;" source="Polysphondylium pallidum (Cellular slime mold).;"
hypothetical protein
RTP_09252017_15_scaffold_24_2
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4996..8655
DNA (3660bp) protein (1220aa)
Conserved repeat domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y085_PEDHD
Conserved repeat domain protein {ECO:0000313|EMBL:ACU04797.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
hypothetical protein
RTP_09252017_15_scaffold_24_3
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8671..9681
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037C371F
Uncharacterized protein {ECO:0000313|EMBL:KIC89146.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
RTP_09252017_15_scaffold_24_4
unknown

Not on your lists

9818..9976
DNA (159bp) protein (53aa)

This feature has no annotations

RTP_09252017_15_scaffold_24_5
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10432..11043
DNA (612bp) protein (204aa)
2Fe-2S ferredoxin n=1 Tax=Pedobacter agri RepID=UPI000299DBB0
2Fe-2S iron-sulfur cluster binding domain-containing protein
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ABQ07210.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
RTP_09252017_15_scaffold_24_6
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11062..13320
DNA (2259bp) protein (753aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000362CF7A
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:ADB36185.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
RTP_09252017_15_scaffold_24_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13447..14685
DNA (1239bp) protein (413aa)
Sodium:dicarboxylate symporter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7Q8_NIAKG
sodium:dicarboxylate symporter
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:AEW03352.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
RTP_09252017_15_scaffold_24_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14703..15266
DNA (564bp) protein (188aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNB8_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV98820.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
RTP_09252017_15_scaffold_24_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15348..16445
DNA (1098bp) protein (366aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niabella soli DSM 19437 RepID=H1NUY5_9SPHI
anti-sigma factor
Anti-sigma factor {ECO:0000313|EMBL:AHF15802.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RTP_09252017_15_scaffold_24_10
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16521..20045
DNA (3525bp) protein (1175aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00038295DD
TonB-dependent receptor plug {ECO:0000313|EMBL:ACY48963.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
TonB-dependent receptor plug
RTP_09252017_15_scaffold_24_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20068..21462
DNA (1395bp) protein (465aa)
RagB/SusD domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MD50_RHOM4
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACY48962.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
RTP_09252017_15_scaffold_24_12
Muricauda ruestringensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21485..22387
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI0003671005
LmbE family protein
LmbE family protein {ECO:0000313|EMBL:AEM72346.1}; Flags: Precursor;; TaxID=886377 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda.;" source="Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1).;"
RTP_09252017_15_scaffold_24_13
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

22449..23675
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00035E4BE2
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EHO42686.1}; Flags: Precursor;; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
major facilitator superfamily protein
RTP_09252017_15_scaffold_24_14
Gillisia limnaea, Gillisia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23714..26362
DNA (2649bp) protein (883aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00035F7D03
Uncharacterized protein {ECO:0000313|EMBL:EHQ03185.1}; Flags: Precursor;; TaxID=865937 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gillisia.;" source="Gillisia limnaea DSM 15749.;"
hypothetical protein
RTP_09252017_15_scaffold_24_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(26466..28241)
DNA (1776bp) protein (592aa)
Butyryl-CoA dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG81_NIAKG
butyryl-CoA dehydrogenase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(28256..28696)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035FC455
MarR family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

28775..29941
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035E634A
beta-lactamase regulatory protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

30000..31043
DNA (1044bp) protein (348aa)
2-oxoacid ferredoxin oxidoreductase subunit beta n=1 Tax=Segetibacter koreensis RepID=UPI00037F63CD
thiamine pyrophosphate domain-containing TPP-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_19
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31080..31463)
DNA (384bp) protein (128aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT13_CHIPD
Ligand-binding protein SH3 {ECO:0000313|EMBL:KEQ28632.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
LuxR family transcriptional regulator
RTP_09252017_15_scaffold_24_20
unknown

Not on your lists

comp(31470..31727)
DNA (258bp) protein (86aa)

This feature has no annotations

RTP_09252017_15_scaffold_24_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

31795..32403
DNA (609bp) protein (203aa)
translation factor Sua5 n=1 Tax=Segetibacter koreensis RepID=UPI0003709EE8
Sua5/YciO/YrdC/YwlC family protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(32400..32978)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A233F
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

33228..34322
DNA (1095bp) protein (365aa)
Heme A synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGB2_NIAKG
Heme A synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

34351..34995
DNA (645bp) protein (215aa)
Pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003650F80
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_25
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(35005..35970)
DNA (966bp) protein (322aa)
Transketolase central region n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PD61_CHIPD
transketolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_26
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(36047..37693)
DNA (1647bp) protein (549aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037D0BA0
carbamoyl-phosphate synthase large subunit
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_27
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

37808..38272
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003829E90
peroxiredoxin
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(38292..40412)
DNA (2121bp) protein (707aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000380A171
ferrous iron transport protein B
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_29
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

40550..42193
DNA (1644bp) protein (548aa)
Peptidase M28 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF38_NIAKG
peptidase M28
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_24_30
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

42227..42670
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF37_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 525 in total

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