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SW_12_Halobacteria_71_31

In projects: SW_12  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_12_UNK

Properties

Avg. coverage: 31.41 Longest contig: 36.91 Kbp Bin length: 947.95 Kbp GC content: 70.91 %
Contigs count: 115 Features count: 1056 rRNAs count: 0 tRNAs count: 16

Genome completeness

near complete RP 29 / 55 MC: 5 BSCG 22 / 51 MC: 1 ASCG 31 / 38 MC: 2
Displaying items 1-50 of 115 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_12_scaffold_1930
Order: Halobacteriales (57.14%)
7 5126 bp 73.20 29.15 98.21
sw_12_scaffold_2888
Order: Halobacteriales (50%)
4 3813 bp 71.70 30.32 98.11
sw_12_scaffold_3454
Class: Halobacteria (100%)
5 4747 bp 71.08 35.41 97.96
sw_12_scaffold_8824
Class: Halobacteria (80%)
5 4027 bp 72.81 27.76 96.25
sw_12_scaffold_1442
Order: Halobacteriales (80%)
10 8282 bp 72.93 34.06 95.56
sw_12_scaffold_3146
Class: Halobacteria (50%)
6 5161 bp 67.95 29.90 94.40
sw_12_scaffold_668
Order: Halobacteriales (50%)
10 10364 bp 71.70 31.58 94.37
sw_12_scaffold_712
Class: Halobacteria (75%)
12 13134 bp 71.01 34.16 94.29
sw_12_scaffold_651
Order: Halobacteriales (50%)
12 8936 bp 71.74 32.11 94.17
sw_12_scaffold_2307
Class: Halobacteria (100%)
5 4293 bp 73.24 29.33 94.13
sw_12_scaffold_7783
Class: Halobacteria (83.33%)
6 3322 bp 72.43 30.28 94.10
sw_12_scaffold_2687
Order: Halobacteriales (57.14%)
7 8063 bp 70.45 34.57 94.10
sw_12_scaffold_785
Order: Halobacteriales (53.33%)
15 15406 bp 71.87 31.94 93.82
sw_12_scaffold_591
Class: Halobacteria (76.92%)
26 17326 bp 70.82 35.26 93.70
sw_12_scaffold_3218
Class: Halobacteria (100%)
9 5621 bp 71.00 30.14 93.67
sw_12_scaffold_3760
Order: Halobacteriales (50%)
6 5426 bp 71.88 31.90 93.55
sw_12_scaffold_1673
Class: Halobacteria (50%)
6 6104 bp 71.64 32.32 93.48
sw_12_scaffold_2603
Order: Halobacteriales (50%)
16 14031 bp 69.42 28.52 92.92
sw_12_scaffold_3495
Class: Halobacteria (80%)
5 6031 bp 71.76 30.18 92.70
sw_12_scaffold_667
Order: Halobacteriales (50%)
12 11996 bp 71.76 32.84 92.41
sw_12_scaffold_3173
Class: Halobacteria (85.71%)
7 4305 bp 72.59 37.82 92.40
sw_12_scaffold_4080
Class: Halobacteria (71.43%)
7 6259 bp 69.72 29.23 92.36
sw_12_scaffold_6862
Order: Halobacteriales (60%)
5 3380 bp 68.22 29.41 92.04
sw_12_scaffold_5468
Order: Halobacteriales (71.43%)
7 4944 bp 69.82 28.76 91.38
sw_12_scaffold_3943
Order: Halobacteriales (60%)
5 5138 bp 68.94 37.37 91.26
sw_12_scaffold_2223
Class: Halobacteria (100%)
7 4387 bp 70.69 33.05 91.02
sw_12_scaffold_2162
Class: Halobacteria (75%)
8 6839 bp 71.02 27.78 90.98
sw_12_scaffold_3602
Order: Halobacteriales (100%)
4 3348 bp 69.56 33.84 90.95
sw_12_scaffold_4190
Order: Halobacteriales (66.67%)
3 3884 bp 71.34 35.48 90.83
sw_12_scaffold_1261
Order: Halobacteriales (50%)
10 12055 bp 71.04 35.69 90.76
sw_12_scaffold_1320
Class: Halobacteria (50%)
8 8351 bp 71.18 29.96 90.49
sw_12_scaffold_5782
Class: Halobacteria (77.78%)
9 8369 bp 71.20 31.21 90.48
sw_12_scaffold_6155
Order: Halobacteriales (57.14%)
7 6288 bp 72.12 30.23 90.46
sw_12_scaffold_4866
Order: Halobacteriales (60%)
5 4473 bp 69.51 34.38 90.07
sw_12_scaffold_757
Class: Halobacteria (92.86%)
14 14243 bp 70.04 30.88 89.95
sw_12_scaffold_2957
Class: Halobacteria (71.43%)
7 8038 bp 70.04 33.39 89.35
sw_12_scaffold_1612
Order: Halobacteriales (50%)
10 9372 bp 69.49 30.90 89.28
sw_12_scaffold_4014
Class: Halobacteria (72.73%)
11 8880 bp 68.63 31.46 89.22
sw_12_scaffold_2196
Class: Halobacteria (71.43%)
14 11378 bp 70.82 33.34 89.07
sw_12_scaffold_2504
Order: Halobacteriales (50%)
10 9080 bp 72.18 34.87 88.98
sw_12_scaffold_2136
Order: Halobacteriales (50%)
8 6988 bp 72.34 31.70 88.52
sw_12_scaffold_10957
Class: Halobacteria (80%)
5 4434 bp 69.58 28.87 88.36
sw_12_scaffold_4228
Order: Halobacteriales (50%)
4 3044 bp 72.31 31.83 88.21
sw_12_scaffold_3573
Order: Halobacteriales (50%)
10 11255 bp 72.57 33.25 88.15
sw_12_scaffold_1693
Order: Halobacteriales (53.19%)
47 36911 bp 70.21 31.25 88.14
sw_12_scaffold_2487
Order: Halobacteriales (75%)
12 12024 bp 71.27 29.84 88.10
sw_12_scaffold_1008
Class: Halobacteria (90.91%)
11 10630 bp 71.76 32.62 88.05
sw_12_scaffold_2671
Order: Halobacteriales (50%)
4 3983 bp 70.65 35.20 87.82
sw_12_scaffold_675
Class: Halobacteria (77.78%)
18 18195 bp 71.98 33.64 87.67
sw_12_scaffold_4296
Class: Halobacteria (100%)
3 3019 bp 71.45 33.75 87.64
Displaying items 1-50 of 115 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.