ggKbase home page
Advanced Search
Search Help

SW_6_Halobacteriales_68_112

In projects: SW_6  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 112.33 Longest contig: 93.23 Kbp Bin length: 1.38 Mbp GC content: 67.84 %
Contigs count: 60 Features count: 1525 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 28 / 55 MC: 3 BSCG 23 / 51 MC: 1 ASCG 28 / 38
Displaying items 1-50 of 60 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_6_scaffold_606
Class: Halobacteria (73.33%)
15 9936 bp 66.26 111.83 75.27
sw_6_scaffold_1172
Order: Halobacteriales (72%)
25 20922 bp 68.24 112.31 77.27
sw_6_scaffold_1048
Class: Halobacteria (81.82%)
11 10467 bp 66.03 111.97 79.16
sw_6_scaffold_953
Order: Halobacteriales (57.89%)
19 16886 bp 67.02 110.72 80.88
sw_6_scaffold_1722
Class: Halobacteria (76.92%)
13 11412 bp 66.49 116.29 81.65
sw_6_scaffold_2174
Genus: Natronomonas (60%)
5 4632 bp 67.92 110.38 81.80
sw_6_scaffold_929
Order: Halobacteriales (50%)
12 7841 bp 67.17 108.39 83.18
sw_6_scaffold_739
Order: Halobacteriales (53.85%)
13 11225 bp 68.88 108.86 83.71
sw_6_scaffold_2539
Order: Natrialbales (50%)
4 4123 bp 69.37 114.04 84.19
sw_6_scaffold_239
Order: Halobacteriales (65.22%)
46 39920 bp 67.14 113.49 84.54
sw_6_scaffold_421
Order: Halobacteriales (60%)
40 39524 bp 67.51 114.03 85.34
sw_6_scaffold_853
Order: Halobacteriales (50%)
14 12556 bp 66.23 109.11 85.37
sw_6_scaffold_292
Order: Halobacteriales (55.56%)
18 17968 bp 68.22 111.87 86.05
sw_6_scaffold_260
Order: Halobacteriales (53.33%)
30 35183 bp 65.70 110.33 86.40
sw_6_scaffold_56
Order: Halobacteriales (56.1%)
41 33630 bp 67.92 109.30 86.67
sw_6_scaffold_1684
Order: Halobacteriales (58.33%)
12 9885 bp 68.40 109.04 86.68
sw_6_scaffold_1543
Order: Halobacteriales (52.94%)
17 13568 bp 67.64 109.49 87.05
sw_6_scaffold_648
Order: Halobacteriales (54.55%)
11 9626 bp 67.46 109.71 87.08
sw_6_scaffold_999
Class: Halobacteria (72.73%)
33 24940 bp 68.23 111.96 87.19
sw_6_scaffold_17
Order: Halobacteriales (51.92%)
52 45622 bp 68.91 117.21 87.54
sw_6_scaffold_688
Order: Halobacteriales (65.22%)
23 20401 bp 68.58 112.78 87.55
sw_6_scaffold_179
Order: Halobacteriales (61.82%)
55 45626 bp 67.08 113.64 88.07
sw_6_scaffold_1513
Order: Halobacteriales (62.5%)
8 5874 bp 69.87 110.79 88.20
sw_6_scaffold_1250
Order: Halobacteriales (63.64%)
11 10338 bp 68.20 112.02 88.25
sw_6_scaffold_148
Class: Halobacteria (70%)
40 32294 bp 67.13 112.68 88.30
sw_6_scaffold_224
Order: Halobacteriales (67.44%)
43 39121 bp 68.50 109.75 88.37
sw_6_scaffold_137
Class: Halobacteria (90.24%)
41 46533 bp 68.56 111.35 88.41
sw_6_scaffold_1895
Order: Halobacteriales (61.54%)
13 9282 bp 68.94 115.22 88.43
sw_6_scaffold_438
Order: Halobacteriales (77.42%)
31 32136 bp 66.83 109.25 88.45
sw_6_scaffold_1833
Order: Halobacteriales (57.14%)
7 5182 bp 70.11 117.54 88.46
sw_6_scaffold_1388
Order: Haloferacales (50%)
12 10404 bp 67.43 110.31 89.07
sw_6_scaffold_325
Order: Halobacteriales (50%)
30 31304 bp 68.87 116.92 89.37
sw_6_scaffold_43
Order: Halobacteriales (55.56%)
72 58174 bp 66.88 111.87 89.48
sw_6_scaffold_37
Order: Halobacteriales (64.21%)
95 76380 bp 67.88 110.34 89.78
sw_6_scaffold_131
Order: Halobacteriales (79.17%)
24 20042 bp 67.90 110.21 89.85
sw_6_scaffold_22
Order: Halobacteriales (61.96%)
92 93231 bp 67.44 114.46 89.90
sw_6_scaffold_117
Order: Halobacteriales (59.46%)
37 27523 bp 66.42 108.63 90.02
sw_6_scaffold_91
Order: Halobacteriales (72.22%)
18 22528 bp 67.25 114.31 90.03
sw_6_scaffold_3558
Order: Halobacteriales (66.67%)
3 3194 bp 66.75 114.25 90.17
sw_6_scaffold_767
Order: Halobacteriales (54.55%)
11 8830 bp 67.87 113.91 90.27
sw_6_scaffold_112
Order: Halobacteriales (63.16%)
38 32314 bp 68.40 110.71 90.45
sw_6_scaffold_789
Order: Halobacteriales (54.55%)
11 9862 bp 67.97 116.04 90.68
sw_6_scaffold_190
Order: Halobacteriales (63.33%)
30 27776 bp 69.16 115.11 90.80
sw_6_scaffold_193
Order: Halobacteriales (68.75%)
48 42724 bp 67.99 108.78 90.86
sw_6_scaffold_98
Order: Halobacteriales (65.96%)
47 33675 bp 68.14 110.96 91.04
sw_6_scaffold_123
Order: Halobacteriales (50%)
22 20439 bp 69.70 111.89 91.13
sw_6_scaffold_889
Order: Halobacteriales (66.67%)
9 13631 bp 66.88 112.21 91.34
sw_6_scaffold_111
Class: Halobacteria (88%)
25 20901 bp 68.38 112.98 91.36
sw_6_scaffold_533
Order: Halobacteriales (68%)
25 16914 bp 68.42 109.09 91.40
sw_6_scaffold_3037
Order: Halobacteriales (60%)
5 3596 bp 66.63 107.98 91.60
Displaying items 1-50 of 60 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.