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berkeley_reactor_200306_planktonic_scaffold_220752

Search features with annotation key words

Displaying items 31-60 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_220752_31
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46856..47842)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Serratia liquefaciens ATCC 27592 RepID=S5EJM9_SERLI
Aldehyde oxidase {ECO:0000313|EMBL:AJY68343.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_32
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(47870..48934)
DNA (1065bp) protein (355aa)
Mannitol dehydrogenase n=2 Tax=unclassified Opitutaceae RepID=H1IMJ0_9BACT
alcohol dehydrogenase
Zn-dependent alcohol dehydrogenase {ECO:0000313|EMBL:EIQ00606.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_220752_33
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49040..49945)
DNA (906bp) protein (302aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Pseudomonas sp. GM55 RepID=J2SZI1_9PSED
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJM72751.1}; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM55.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_220752_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(50200..50631)
DNA (432bp) protein (144aa)
Heat shock protein Hsp20 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRD8_9BACT
Heat shock protein Hsp20 {ECO:0000313|EMBL:EEF57572.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
heat shock protein Hsp20
berkeley_reactor_200306_planktonic_scaffold_220752_35
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

50946..51506
DNA (561bp) protein (187aa)
Ferripyochelin binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPU0_9BACT
Ferripyochelin binding protein {ECO:0000313|EMBL:EEF58121.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
carbonic anhydrase
berkeley_reactor_200306_planktonic_scaffold_220752_36
unknown

Not on your lists

comp(51819..52040)
DNA (222bp) protein (74aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220752_37
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

52280..52888
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJQ7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59933.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_220752_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

52895..53569
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJQ8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59934.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_220752_39
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

53675..54958
DNA (1284bp) protein (428aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00217838}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00217866};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Gamma-glutamyl phosphate reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9N4_9BACT
gamma-glutamyl phosphate reductase
berkeley_reactor_200306_planktonic_scaffold_220752_40
unknown

Not on your lists

55008..55193
DNA (186bp) protein (62aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220752_41
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

55171..55488
DNA (318bp) protein (106aa)
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEM0_9BACT
Transcriptional modulator of MazE/toxin, MazF {ECO:0000313|EMBL:EEF61734.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transcriptional modulator of MazE/toxin, MazF
berkeley_reactor_200306_planktonic_scaffold_220752_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

55494..56825
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9N3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63277.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_43
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

56822..57457
DNA (636bp) protein (212aa)
Multiple antibiotic resistance (MarC)-related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPN0_9BACT
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_44

Not on your lists

comp(57921..58454)
DNA (534bp) protein (178aa)
Marine sediment metagenome DNA, contig: S12H4_L04462 {ECO:0000313|EMBL:GAI76315.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein id=4214138 bin=GWF2_Lentisphaerae_57_35 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_45
unknown

Not on your lists

comp(58493..58750)
DNA (258bp) protein (86aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220752_46
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(58796..59362)
DNA (567bp) protein (189aa)
Response regulator receiver protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL80_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EEF59431.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GAF sensor hybrid histidine kinase
berkeley_reactor_200306_planktonic_scaffold_220752_47
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

59553..60977
DNA (1425bp) protein (475aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL81_9BACT
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_220752_48
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

60974..62392
DNA (1419bp) protein (473aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL82_9BACT
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EEF59433.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
NtrC family two-component response regulator
berkeley_reactor_200306_planktonic_scaffold_220752_49
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(62423..62980)
DNA (558bp) protein (186aa)
peptide methionine sulfoxide reductase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000347457E
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_220752_50
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(62993..66535)
DNA (3543bp) protein (1181aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000255|HAMAP-Rule:MF_01452}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01452};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01452};; ATP-dependent helicase/nuclease AddB {ECO:0000255|HAMAP-Rule:MF_01452}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=ADDB_HELMI
addB; ATP-dependent nuclease subunit b
berkeley_reactor_200306_planktonic_scaffold_220752_51
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

66702..68549
DNA (1848bp) protein (616aa)
Beta-glucuronidase (EC:3.2.1.31)
Beta-glucuronidase {ECO:0000313|EMBL:ACB76629.1}; EC=3.2.1.31 {ECO:0000313|EMBL:ACB76629.1};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Beta-glucuronidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZU63_OPITP
berkeley_reactor_200306_planktonic_scaffold_220752_52
unknown

Not on your lists

68546..68722
DNA (177bp) protein (59aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220752_53
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

69037..69855
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPT8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58119.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_54
Smithella sp. F21, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69877..71325
DNA (1449bp) protein (483aa)
Gram-positive signal peptide protein, YSIRK family n=1 Tax=delta proteobacterium NaphS2 RepID=D8F7C1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KFN38242.1}; TaxID=1538640 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. F21.;"
berkeley_reactor_200306_planktonic_scaffold_220752_55
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(71366..72025)
DNA (660bp) protein (220aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000255|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000255|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PCD {ECO:0000255|HAMAP-Rule:MF_00434};; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=PHS_THERP
putative pterin-4-alpha-carbinolamine dehydratase
berkeley_reactor_200306_planktonic_scaffold_220752_56
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(71994..72941)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HPL2_CYAP4
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
berkeley_reactor_200306_planktonic_scaffold_220752_57
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(72957..73361)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNQ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58482.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_220752_58
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73361..74029)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PGY5_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX61652.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_59
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(74171..74983)
DNA (813bp) protein (271aa)
SMF family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI17_9BACT
SMF family protein {ECO:0000313|EMBL:EEF60510.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Smf; Rossmann fold nucleotide-binding protein
berkeley_reactor_200306_planktonic_scaffold_220752_60
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75127..77991
DNA (2865bp) protein (955aa)
RecB family nuclease, putative n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TIC9_9CHLR
transposase IS66
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
Displaying items 31-60 of 373 in total

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