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berkeley_reactor_200306_planktonic_scaffold_220752

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Displaying items 91-120 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_220752_91
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(106232..106876)
DNA (645bp) protein (215aa)
type II site-specific deoxyribonuclease (EC:3.1.21.4)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YVE6_9BACT
Tax=RBG_13_OP8X_37_8_curated
berkeley_reactor_200306_planktonic_scaffold_220752_92
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107540..108397
DNA (858bp) protein (286aa)
Formate/nitrite transporter family protein n=1 Tax=Rhizobium sp. CF080 RepID=J2STP4_9RHIZ
Formate transporter {ECO:0000313|EMBL:KGD96335.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Formate/nitrite transporter
berkeley_reactor_200306_planktonic_scaffold_220752_93
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(108655..109167)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHR6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60644.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_94
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(109311..109631)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002FFC06C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEF62347.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_220752_95
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(109638..110102)
DNA (465bp) protein (155aa)
ATPase {ECO:0000313|EMBL:KFF10062.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
Activator of Hsp90 ATPase 1 family protein id=3870732 bin=GWF2_Melioribacter_38_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
activator of hsp90 ATPase 1 family protein
berkeley_reactor_200306_planktonic_scaffold_220752_96
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(110109..110432)
DNA (324bp) protein (108aa)
ArsR family transcriptional regulator n=1 Tax=Niabella aurantiaca RepID=UPI000378FC50
ArsR family transcriptional regulator {ECO:0000313|EMBL:KIC95421.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ArsR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_220752_97
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(110662..111306)
DNA (645bp) protein (215aa)
Bifunctional deaminase-reductase domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQG3_OPITP
deaminase-reductase domain-containing protein
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:ACB73642.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220752_98
Bacillus cytotoxicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(111625..112251)
DNA (627bp) protein (209aa)
pyrrolidone-carboxylate peptidase (EC:3.4.19.3)
Pyrrolidone-carboxylate peptidase {ECO:0000255|HAMAP-Rule:MF_00417}; EC=3.4.19.3 {ECO:0000255|HAMAP-Rule:MF_00417};; 5-oxoprolyl-peptidase {ECO:0000255|HAMAP-Rule:MF_00417}; Pyroglutamyl-peptidase I {ECO:0000255|HAMAP-Rule:MF_00417}; Short=PGP-I {ECO:0000255|HAMAP-Rule:MF_00417};; Short=Pyrase {ECO:0000255|HAMAP-Rule:MF_00417};; TaxID=315749 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus subsp. cytotoxis (strain NVH 391-98).;"
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00037AE25E
berkeley_reactor_200306_planktonic_scaffold_220752_99
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(112321..112665)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XET6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61800.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_220752_100
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

112864..113475
DNA (612bp) protein (204aa)
Transposase id=4449892 bin=GWC2_Ignavibacteria_56_12 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
transposase
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
berkeley_reactor_200306_planktonic_scaffold_220752_101
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(113751..114569)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Paenibacillus mucilaginosus 3016 RepID=H6NNI0_9BACL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC33301.1}; TaxID=1116391 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus 3016.;"
berkeley_reactor_200306_planktonic_scaffold_220752_102
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(114577..116613)
DNA (2037bp) protein (679aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Phosphomethylpyrimidine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D313_9BACT
thiamine biosynthesis protein ThiC
berkeley_reactor_200306_planktonic_scaffold_220752_103
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116921..118642)
DNA (1722bp) protein (574aa)
Transporter, SSS family n=1 Tax=Leptospira wolffii serovar Khorat str. Khorat-H2 RepID=S3UM73_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:ETW97901.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Sodium/proline symporter
berkeley_reactor_200306_planktonic_scaffold_220752_104
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118639..120900)
DNA (2262bp) protein (754aa)
Glucosylglycerol-phosphate synthase n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DPW9_9GAMM
glucosylglycerol-phosphate synthase
Glucosylglycerol-phosphate synthase {ECO:0000313|EMBL:AHK16558.1}; TaxID=1208320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans R6-15.;"
berkeley_reactor_200306_planktonic_scaffold_220752_105
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121409..124063
DNA (2655bp) protein (885aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000365AF2D
magnesium-translocating P-type ATPase
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:ACL07394.1}; TaxID=883 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637).;"
berkeley_reactor_200306_planktonic_scaffold_220752_106
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(124252..126897)
DNA (2646bp) protein (882aa)
Tetratricopeptide domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIT7_9BACT
Tetratricopeptide domain protein {ECO:0000313|EMBL:EEF60164.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_107
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

127056..128237
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSV8_OPITP
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_220752_108
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

128380..129216
DNA (837bp) protein (279aa)
Membrane protein-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNZ5_9BACT
Membrane protein-like protein {ECO:0000313|EMBL:EEF58461.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_109
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

129158..131266
DNA (2109bp) protein (703aa)
Membrane protein-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNZ5_9BACT
Membrane protein-like protein {ECO:0000313|EMBL:EEF58461.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_110
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131473..132843
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SB80_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD91457.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_111
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(132880..133923)
DNA (1044bp) protein (348aa)
L-threonine aldolase {ECO:0000256|PIRNR:PIRNR038940}; EC=4.1.2.48 {ECO:0000256|PIRNR:PIRNR038940};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Threonine aldolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKJ3_9BACT
threonine aldolase
berkeley_reactor_200306_planktonic_scaffold_220752_112
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(133925..134632)
DNA (708bp) protein (236aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLC5_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF59328.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter-like protein
berkeley_reactor_200306_planktonic_scaffold_220752_113
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(134639..135400)
DNA (762bp) protein (254aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLC4_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF59327.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter-like protein
berkeley_reactor_200306_planktonic_scaffold_220752_114
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(135410..136798)
DNA (1389bp) protein (463aa)
TPR repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQB1_9BACT
TPR repeat-containing protein {ECO:0000313|EMBL:EEF57935.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptidase C14 caspase catalytic subunit p20
berkeley_reactor_200306_planktonic_scaffold_220752_115
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(136808..137755)
DNA (948bp) protein (316aa)
Inner-membrane translocator n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLC3_9BACT
Inner-membrane translocator {ECO:0000313|EMBL:EEF59326.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
inner-membrane translocator
berkeley_reactor_200306_planktonic_scaffold_220752_116
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(137752..138579)
DNA (828bp) protein (276aa)
Inner-membrane translocator n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLC2_9BACT
Inner-membrane translocator {ECO:0000313|EMBL:EEF59325.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_220752_117
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(138706..139065)
DNA (360bp) protein (120aa)
S23 ribosomal protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D004_9BACT
S23 ribosomal protein {ECO:0000313|EMBL:EDY20318.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
S23 ribosomal protein
berkeley_reactor_200306_planktonic_scaffold_220752_118
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(139116..140303)
DNA (1188bp) protein (396aa)
Extracellular ligand-binding receptor n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLC1_9BACT
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EEF59324.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ethanolamine utilization protein EutJ
berkeley_reactor_200306_planktonic_scaffold_220752_119
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140423..141034
DNA (612bp) protein (204aa)
Transcriptional regulator, TetR family n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PGR5_9DELT
TetR family transcriptional regulator
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
berkeley_reactor_200306_planktonic_scaffold_220752_120
unknown

Not on your lists

141061..141171
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying items 91-120 of 373 in total

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