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NECEvent2014_5_1_scaffold_47

Alias: 175_007_scaffold_47

Search features with annotation key words

Displaying items 31-60 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_1_scaffold_47_31
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34957..35991)
DNA (1035bp) protein (345aa)
nrdB; ribonucleoside-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Cl
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUX1_9CLOT rbh
NECEvent2014_5_1_scaffold_47_32
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36013..38283)
DNA (2271bp) protein (757aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiacea
ribonucleoside-diphosphate reductase, alpha subunit (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase, alpha subunit n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEC7_9CLOT rbh
NECEvent2014_5_1_scaffold_47_33
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38471..40243)
DNA (1773bp) protein (591aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WCK5_9CLOT rbh
his Kinase A domain protein
Uncharacterized protein {ECO:0000313|EMBL:KJU71480.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_5_1_scaffold_47_34
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40266..40955)
DNA (690bp) protein (230aa)
Regulatory protein VanR n=4 Tax=Clostridium butyricum RepID=B1QZU8_CLOBU rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ETI91707.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
two component transcriptional regulator
NECEvent2014_5_1_scaffold_47_35
unknown

Not on your lists

comp(41042..41206)
DNA (165bp) protein (55aa)

This feature has no annotations

NECEvent2014_5_1_scaffold_47_36
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41335..42192
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXW3_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ00734.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
NECEvent2014_5_1_scaffold_47_37
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42209..42772)
DNA (564bp) protein (188aa)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LPV0_CLOB8
fumarate hydratase
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit {ECO:0000313|EMBL:ABR32380.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
NECEvent2014_5_1_scaffold_47_38
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42782..43624)
DNA (843bp) protein (281aa)
putative fumarate hydratase subunit alpha (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TYF7_9CLOT rbh
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily {ECO:0000313|EMBL:EKQ52172.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostr
NECEvent2014_5_1_scaffold_47_39
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43765..44415)
DNA (651bp) protein (217aa)
cwlD; N-acetylmuramoyl-L-alanine amidase CwlD (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase CwlD n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKK7_9CLOT
N-acetylmuramoyl-L-alanine amidase CwlD {ECO:0000313|EMBL:EKQ52170.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
NECEvent2014_5_1_scaffold_47_40
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44516..46117)
DNA (1602bp) protein (534aa)
Na/Pi-cotransporter family protein/PhoU family protein n=2 Tax=Clostridium botulinum E RepID=B2UYE7_CLOBA rbh
Na/Pi-cotransporter family protein/PhoU family protein
Sodium-dependent phosphate transporter {ECO:0000313|EMBL:KIL08577.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.
NECEvent2014_5_1_scaffold_47_41
unknown

Not on your lists

46632..46877
DNA (246bp) protein (82aa)

This feature has no annotations

NECEvent2014_5_1_scaffold_47_42
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(46971..47363)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEC1_9CLOT
ribosomal S9/S16 family protein
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
NECEvent2014_5_1_scaffold_47_43
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(47389..47823)
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H675_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplM; 50S ribosomal protein L13
NECEvent2014_5_1_scaffold_47_44
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47987..48721)
DNA (735bp) protein (245aa)
truA; tRNA pseudouridine(38-40) synthase (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171, ECO:0000313|EMBL:AIY83113.1};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rul
tRNA pseudouridine synthase A n=1 Tax=Clostridium colicanis 209318 RepID=N9WCL0_9CLOT rbh
NECEvent2014_5_1_scaffold_47_45
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(48735..49538)
DNA (804bp) protein (268aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CF00_9CLOT rbh
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1202534 species="Bacte
cobalt transport family protein
NECEvent2014_5_1_scaffold_47_46
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49551..50408)
DNA (858bp) protein (286aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-
cbiO2; cobalt transporter ATP-binding protein CbiO (EC:3.6.3.-)
Cobalt import ATP-binding protein CbiO 1 n=4 Tax=Clostridium butyricum RepID=B1QYD9_CLOBU rbh
NECEvent2014_5_1_scaffold_47_47
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50393..51238)
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-
cobalt ABC transporter ATP-binding protein n=1 Tax=Clostridium botulinum RepID=UPI00037DB275 rbh
ABC transporter family protein
NECEvent2014_5_1_scaffold_47_48
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(51354..51695)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H674_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplQ; 50S ribosomal protein L17
NECEvent2014_5_1_scaffold_47_49
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51708..52655)
DNA (948bp) protein (316aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
rpoA; DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium intestinale URNW RepID=U2Q8E9_9CLOT rbh
NECEvent2014_5_1_scaffold_47_50
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(52758..53378)
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FQF3_9CLOT rbh
rpsD; ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sull
NECEvent2014_5_1_scaffold_47_51
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(53406..53801)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FDB1_9CLOT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.
rpsK; 30S ribosomal protein S11
NECEvent2014_5_1_scaffold_47_52
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(53817..54182)
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=2 Tax=environmental samples RepID=R6G0M9_9CLOT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clost
rpsM; 30S ribosomal protein S13
NECEvent2014_5_1_scaffold_47_53
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54406..54519)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=4 Tax=Clostridium RepID=L1QJU0_9CLOT
LSU ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
NECEvent2014_5_1_scaffold_47_54
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54563..54781)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=14 Tax=Clostridium RepID=IF1_CLOB8
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:AIY79161.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
NECEvent2014_5_1_scaffold_47_55
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55138..55887)
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H244_9CLOT rbh
NECEvent2014_5_1_scaffold_47_56
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55887..56534)
DNA (648bp) protein (216aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase n=1 Tax=Clostridium colicanis 209318 RepID=N9XM49_9CLOT rbh
adenylate kinase family protein
NECEvent2014_5_1_scaffold_47_57
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(56558..57829)
DNA (1272bp) protein (424aa)
Protein translocase subunit SecY n=1 Tax=Clostridium colicanis 209318 RepID=N9XXX8_9CLOT rbh
secY; preprotein translocase, SecY subunit
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
NECEvent2014_5_1_scaffold_47_58
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(57831..58271)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML62_CLOSA
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
NECEvent2014_5_1_scaffold_47_59
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(58293..58472)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=2 Tax=Clostridium RepID=K6TX22_9CLOT
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
NECEvent2014_5_1_scaffold_47_60
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(58486..58983)
DNA (498bp) protein (166aa)
30S ribosomal protein S5 n=2 Tax=environmental samples RepID=R6KUD7_9CLOT rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environm
rpsE; 30S ribosomal protein S5
Displaying items 31-60 of 78 in total

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