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SCNpilot_expt_1000_bf_scaffold_953_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_953_curated_1
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(172..414)
DNA (243bp) protein (81aa)
inorganic phosphate transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003634E24
Phosphate/sulfate permease {ECO:0000313|EMBL:EJN04630.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
putative low-affinity phosphate transport protein
SCNpilot_expt_1000_bf_scaffold_953_curated_2
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

866..1204
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08QU6_STIAD
Uncharacterized protein {ECO:0000313|EMBL:EAU62856.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_expt_1000_bf_scaffold_953_curated_3
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1176..1820)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8BEE4_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KIV67226.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
hypothetical protein; K07220 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_953_curated_4
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1955..4735)
DNA (2781bp) protein (927aa)
Putative diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ99_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:KGE80307.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_953_curated_5
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4992..6638)
DNA (1647bp) protein (549aa)
Sodium-dependent inorganic phosphate (Pi) transporter n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PRZ0_9RHIZ
Sodium-dependent inorganic phosphate (Pi) transporter {ECO:0000313|EMBL:CCM76598.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
sodium-dependent inorganic phosphate (Pi) transporter; K03324 phosphate:Na+ symporter
SCNpilot_expt_1000_bf_scaffold_953_curated_6
unknown

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comp(7017..7136)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_953_curated_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7319..15820)
DNA (8502bp) protein (2834aa)
ndvB; beta-1,2-glucan production associated transmembrane protein; K13688 cyclic beta-1,2-glucan synthetase [EC:2.4.1.-]
protein ndvB n=1 Tax=Rhizobium leguminosarum RepID=UPI000374CECF
Beta-1,2-glucan production associated transmembrane protein {ECO:0000313|EMBL:ACE93212.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_953_curated_8
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16086..17249)
DNA (1164bp) protein (388aa)
hipO; hippurate hydrolase; K01451 hippurate hydrolase [EC:3.5.1.32]
Hippurate hydrolase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PK65_9RHIZ
Hippurate hydrolase {ECO:0000313|EMBL:EKF61303.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_953_curated_9
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17251..18072)
DNA (822bp) protein (274aa)
ABC transporter permease n=2 Tax=Labrenzia RepID=U7G5M7_9RHOB
ABC transporter permease {ECO:0000313|EMBL:ERP93545.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
occM1; octopine transport system permease protein OccM
SCNpilot_expt_1000_bf_scaffold_953_curated_10
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18077..18808)
DNA (732bp) protein (244aa)
Putative transport system permease abc transporter protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NVY6_9RHOB
Putative transport system permease abc transporter protein {ECO:0000313|EMBL:EAV43151.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
amino-acid ABC transporter permease protein; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_953_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18904..19743)
DNA (840bp) protein (280aa)
amino acid ABC transporter n=1 Tax=Rhizobium giardinii RepID=UPI0003606B1F
Histidine-binding periplasmic protein HisJ {ECO:0000313|EMBL:EYR83366.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter periplasmic protein
SCNpilot_expt_1000_bf_scaffold_953_curated_12
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19743..20516)
DNA (774bp) protein (258aa)
phosphate-transporting ATPase (EC:3.6.3.27); K10025 arginine/ornithine transport system ATP-binding protein [EC:3.6.3.-]
Phosphate-transporting ATPase {ECO:0000313|EMBL:AEG03129.1}; EC=3.6.3.27 {ECO:0000313|EMBL:AEG03129.1};; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
ATP-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI00037E63D8
SCNpilot_expt_1000_bf_scaffold_953_curated_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20874..21530
DNA (657bp) protein (219aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J3B1J0_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:KGD96293.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
HTH-type transcriptional regulator, TetR family
SCNpilot_expt_1000_bf_scaffold_953_curated_14
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21535..22740
DNA (1206bp) protein (402aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Rhizobium sp. CF080 RepID=J2HF10_9RHIZ
Aminotransferase {ECO:0000313|EMBL:KGD96294.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
aminotransferase
SCNpilot_expt_1000_bf_scaffold_953_curated_15
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23057..23221
DNA (165bp) protein (55aa)
UPF0391 membrane protein PMI09_04013 n=1 Tax=Rhizobium sp. CF122 RepID=J3BJZ4_9RHIZ
UPF0391 membrane protein LPU83_4178 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
putative transmembrane protein
SCNpilot_expt_1000_bf_scaffold_953_curated_16
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23326..24735)
DNA (1410bp) protein (470aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
leuC; isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
isopropylmalate isomerase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036DEA08
SCNpilot_expt_1000_bf_scaffold_953_curated_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25040..25531
DNA (492bp) protein (164aa)
Ribosomal silencing factor RsfS n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQQ7_RHITR
hypothetical protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_953_curated_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25683..26165
DNA (483bp) protein (161aa)
rRNA large subunit methyltransferase; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacteriu
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2A4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_953_curated_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26326..27729
DNA (1404bp) protein (468aa)
Membrane-bound metallopeptidase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H4P3_RHILT
Membrane-bound metallopeptidase {ECO:0000313|EMBL:EJB04973.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
peptidase M23
SCNpilot_expt_1000_bf_scaffold_953_curated_20
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29137..30327
DNA (1191bp) protein (397aa)
polysaccharide deacetylase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037CDCEA
Uncharacterized protein {ECO:0000313|EMBL:EJJ25707.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein; K09798 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_953_curated_21
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30360..30881
DNA (522bp) protein (174aa)
ialA; dinucleoside polyphosphate hydrolase; K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
RNA pyrophosphohydrolase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JES5_AGRRK
SCNpilot_expt_1000_bf_scaffold_953_curated_22
unknown

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30990..31205
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_953_curated_23
unknown

Not on your lists

31202..31330
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_953_curated_24
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31282..31677)
DNA (396bp) protein (132aa)
Glyoxalase-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHQ9_9SPHN
glyoxalase-family protein
Glyoxalase {ECO:0000313|EMBL:KCZ47219.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
SCNpilot_expt_1000_bf_scaffold_953_curated_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31894..32319
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2ABC9_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE58298.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_953_curated_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32249..32560)
DNA (312bp) protein (104aa)
Uncharacterized protein n=8 Tax=Rhizobium meliloti RepID=F7X0J5_SINMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH80531.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_953_curated_27
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32738..36109)
DNA (3372bp) protein (1124aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Error-prone DNA polymerase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSB5_RHITR
error-prone DNA polymerase
SCNpilot_expt_1000_bf_scaffold_953_curated_28
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36106..36864)
DNA (759bp) protein (253aa)
DNA-repair protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B79341
DNA-repair protein ImuB 1 {ECO:0000313|EMBL:AJD43311.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
nucleotidyltransferase protein; K14161 protein ImuB
SCNpilot_expt_1000_bf_scaffold_953_curated_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36864..37547)
DNA (684bp) protein (228aa)
Nucleotidyltransferase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UTZ3_9RHIZ
Nucleotidyltransferase protein {ECO:0000313|EMBL:ENN84271.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
nucleotidyltransferase/DNA polymerase
SCNpilot_expt_1000_bf_scaffold_953_curated_30
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37519..38457)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQS7_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB73066.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying items 1-30 of 50 in total

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