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SCNpilot_expt_1000_bf_scaffold_1867_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1867_curated_1
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..254)
DNA (252bp) protein (84aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
glutathione synthetase (EC:6.3.2.3); K01920 glutathione synthase [EC:6.3.2.3]
glutathione synthetase n=1 Tax=Rhizobium mongolense RepID=UPI0003B42399
SCNpilot_expt_1000_bf_scaffold_1867_curated_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(365..862)
DNA (498bp) protein (166aa)
cupin n=1 Tax=Rhizobium mongolense RepID=UPI0003B46813
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB69815.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1867_curated_3
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(954..2075)
DNA (1122bp) protein (374aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000256|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000256|HAMAP-Rule:MF_01727};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Putative sugar ABC transporter (ATP binding protein); putative glycerol 3-phosphate transport protein, ugpC-like protein (EC:3.6.3.-)
ATPase component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF122 RepID=J3BIA3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1867_curated_4
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2088..2930)
DNA (843bp) protein (281aa)
sn-glycerol-3-phosphate ABC transporter membrane protein id=2428723 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, ugpE-like protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_1867_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2944..3825)
DNA (882bp) protein (294aa)
glycerol-3-phosphate transporter permease n=1 Tax=Rhizobium radiobacter RepID=UPI0003741524
Glycerol-3-phosphate transporter permease {ECO:0000313|EMBL:KDR87392.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
Putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, ugpA-like protein
SCNpilot_expt_1000_bf_scaffold_1867_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3896..5194)
DNA (1299bp) protein (433aa)
sn-glycerol 3-phosphate ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00035E2B8E
Strain MEJ076 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ04744.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
ugpA; ABC transporter substrate-binding protein (sn-glycerol 3-phosphate); K05813 sn-glycerol 3-phosphate transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1867_curated_7
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5309..5677)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000366DEA4
hypothetical protein; K07460 putative endonuclease
UPF0102 protein RCCGEPOP_06396 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_1000_bf_scaffold_1867_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5667..6578)
DNA (912bp) protein (304aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Putative methyltransferase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PZ57_RHIE6
SCNpilot_expt_1000_bf_scaffold_1867_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6830..7948
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HPV8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1867_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8023..8961
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9X6X0_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJB04571.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1867_curated_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9066..9704
DNA (639bp) protein (213aa)
Phospholipid N-methyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J3BWA2_9RHIZ
Phospholipid N-methyltransferase {ECO:0000313|EMBL:CDN50648.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
pmtA1; phospholipid N-methyltransferase
SCNpilot_expt_1000_bf_scaffold_1867_curated_12
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9686..10288
DNA (603bp) protein (201aa)
Fructose-2,6-bisphosphatase n=1 Tax=Rhizobium sp. CF122 RepID=J3BGZ8_9RHIZ
Putative conserved protein {ECO:0000313|EMBL:CDM56068.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
phosphoglycerate mutase
SCNpilot_expt_1000_bf_scaffold_1867_curated_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10275..10967
DNA (693bp) protein (231aa)
pyrF; orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Orotidine 5'-phosphate decarboxylase n=2 Tax=Rhizobium/Agrobacterium group RepID=PYRF_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_1867_curated_14
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10990..11277
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035EF14B
Uncharacterized protein {ECO:0000313|EMBL:KGD86539.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1867_curated_15
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11389..12510
DNA (1122bp) protein (374aa)
NADH dehydrogenase (Ubiquinone) {ECO:0000313|EMBL:ABR62354.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABR62354.1};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
NADH dehydrogenase (Ubiquinone) n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UFC4_SINMW
NADH dehydrogenase (ubiquinone)
SCNpilot_expt_1000_bf_scaffold_1867_curated_16
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12632..12796
DNA (165bp) protein (55aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=U4Q0D7_9RHIZ
conserved exported protein of unknown function
Putative signal peptide protein {ECO:0000313|EMBL:KIV62107.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
SCNpilot_expt_1000_bf_scaffold_1867_curated_17
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12849..13655)
DNA (807bp) protein (269aa)
bacA; undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27] rbh
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
Undecaprenyl-diphosphatase 1 n=2 Tax=Agrobacterium RepID=UPPP1_AGRT5 rbh
SCNpilot_expt_1000_bf_scaffold_1867_curated_18
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13804..14496
DNA (693bp) protein (231aa)
Glutathione S-transferase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HM39_9RHIZ
Glutathione S-transferase {ECO:0000313|EMBL:EPE99947.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
glutathione S-transferase protein
SCNpilot_expt_1000_bf_scaffold_1867_curated_19
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15874..16581
DNA (708bp) protein (236aa)
Oxidoreductase n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7EVH2_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:EXL09197.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1867_curated_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16707..17738
DNA (1032bp) protein (344aa)
mepA; penicillin-insensitive murein endopeptidase; K07261 penicillin-insensitive murein endopeptidase [EC:3.4.24.-]
Penicillin-insensitive murein endopeptidase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M495_9RHIZ
Penicillin-insensitive murein endopeptidase {ECO:0000313|EMBL:EKF16851.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_1867_curated_21
unknown

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comp(17792..18118)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1867_curated_22
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18988..19224
DNA (237bp) protein (79aa)
Glucokinase {ECO:0000256|HAMAP-Rule:MF_00524}; EC=2.7.1.2 {ECO:0000256|HAMAP-Rule:MF_00524};; Glucose kinase {ECO:0000256|HAMAP-Rule:MF_00524}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
UPI0003CF17B3 related cluster n=1 Tax=unknown RepID=UPI0003CF17B3
glucokinase
SCNpilot_expt_1000_bf_scaffold_1867_curated_23
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19288..20103
DNA (816bp) protein (272aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJC9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1867_curated_24
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20100..20522
DNA (423bp) protein (141aa)
UPF0310 protein B30_07481 n=1 Tax=Celeribacter baekdonensis B30 RepID=K2IRE9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB76215.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1867_curated_25
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20548..21168
DNA (621bp) protein (207aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phylloba
phosphoglyceromutase (EC:5.4.2.1) rbh
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHW5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1867_curated_26
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21530..21793
DNA (264bp) protein (88aa)
UPI0003CDE7E7 related cluster n=2 Tax=unknown RepID=UPI0003CDE7E7
Uncharacterized protein {ECO:0000313|EMBL:ESY10834.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
integrase domain-containing protein
Displaying 26 items

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