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SCNpilot_expt_1000_bf_scaffold_8148_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8148_curated_1
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..360)
DNA (360bp) protein (120aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD80923.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MNR1_9FIRM
SCNpilot_expt_1000_bf_scaffold_8148_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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596..2023
DNA (1428bp) protein (476aa)
NAD-dependent malic enzyme {ECO:0000313|EMBL:EYR80071.1}; EC=1.1.1.39 {ECO:0000313|EMBL:EYR80071.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dme; NAD-dependent malic enzyme (EC:1.1.1.39) rbh
malic enzyme n=1 Tax=Rhizobium meliloti RepID=UPI0003735CE7 rbh
SCNpilot_expt_1000_bf_scaffold_8148_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2186..3235)
DNA (1050bp) protein (350aa)
ATPase component of ABC transporter {ECO:0000313|EMBL:EYR80074.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATPase component of ABC transporters with duplicated ATPase domain n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0VB02_RHILV rbh
ABC transporter ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_8148_curated_4
unknown

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3470..3814
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8148_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4217..5029
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWR1_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80076.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8148_curated_6
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5114..5878)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003776CFB
Uncharacterized protein {ECO:0000313|EMBL:ENA32717.1}; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HPB0071.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8148_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5974..7653)
DNA (1680bp) protein (560aa)
Glutamine-dependent NAD(+) synthetase NadE {ECO:0000313|EMBL:EYR80081.1}; EC=6.3.5.1 {ECO:0000313|EMBL:EYR80081.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Glutamine-dependent NAD(+) synthetase NadE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWQ6_9RHIZ rbh
glutamine-dependent NAD(+) synthetase (NAD(+) synthase) rbh
SCNpilot_expt_1000_bf_scaffold_8148_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7947..9788
DNA (1842bp) protein (614aa)
Putative cyclic beta-1,2-glucan modification protein CgmA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5L6_9RHIZ rbh
Putative cyclic beta-1,2-glucan modification protein CgmA {ECO:0000313|EMBL:EYR80082.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative cyclic beta-1,2-glucan modification protein rbh
SCNpilot_expt_1000_bf_scaffold_8148_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9921..10463
DNA (543bp) protein (181aa)
Putative membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D106_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EYR80083.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8148_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10607..11029
DNA (423bp) protein (141aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR80084.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative signal peptide protein
signal peptide protein n=1 Tax=Rhizobium meliloti RepID=UPI0003626411
SCNpilot_expt_1000_bf_scaffold_8148_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11031..12740
DNA (1710bp) protein (570aa)
Putative membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5S7_9RHIZ rbh
Putative membrane protein {ECO:0000313|EMBL:EYR80085.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_8148_curated_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12756..13151)
DNA (396bp) protein (132aa)
Aldehyde-activating protein {ECO:0000313|EMBL:KDP74550.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003622FE2
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_8148_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13275..14309)
DNA (1035bp) protein (345aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KDP74551.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
phospho-2-dehydro-3-deoxyheptonate aldolase; K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] rbh
Phospho-2-dehydro-3-deoxyheptonate aldolase n=2 Tax=Sinorhizobium medicae RepID=A6U9T1_SINMW rbh
Displaying 13 items

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