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scnpilot_solids1_trim150_scaffold_378_curated

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_378_curated_1
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..519)
DNA (519bp) protein (173aa)
N(G),N(G)-dimethylarginine dimethylaminohydrolase n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UW68_9ACTO
N(G),N(G)-dimethylarginine dimethylaminohydrolase {ECO:0000313|EMBL:KJR06544.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
N-dimethylarginine dimethylaminohydrolase
scnpilot_solids1_trim150_scaffold_378_curated_2
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(649..1629)
DNA (981bp) protein (327aa)
Probable DNA repair protein Namu_0127 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XIX4_NAKMY
Ku protein; K10979 DNA end-binding protein Ku
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_378_curated_3
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1722..4247
DNA (2526bp) protein (842aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
DNA polymerase LigD, polymerase domain protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XIX5_NAKMY
DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:ACV76562.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_378_curated_4
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4384..4797)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0L0S8_9ACTO
Cation transport regulator ChaB {ECO:0000313|EMBL:EWT04332.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_378_curated_5
unknown

Not on your lists

5078..5302
DNA (225bp) protein (75aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_378_curated_6
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5387..7858)
DNA (2472bp) protein (824aa)
ABC transporter n=1 Tax=Cellulomonas sp. JC225 RepID=UPI0002FC7408
excinuclease ABC subunit A
Excinuclease abc subunit a uvra1 {ECO:0000313|EMBL:AEB43815.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
scnpilot_solids1_trim150_scaffold_378_curated_7
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7988..8731)
DNA (744bp) protein (248aa)
Serine/threonine-protein kinase pkn1 {ECO:0000313|EMBL:KJL24810.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KJL24810.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
serine or threonine kinase n=1 Tax=Streptomyces sp. CcalMP-8W RepID=UPI000369F12D
serine or threonine kinase
scnpilot_solids1_trim150_scaffold_378_curated_8
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8886..9410
DNA (525bp) protein (175aa)
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SKW9_NOCSJ
Carbonic anhydrase {ECO:0000313|EMBL:ABL82454.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
scnpilot_solids1_trim150_scaffold_378_curated_9
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9786..11102
DNA (1317bp) protein (439aa)
glycine betaine/L-proline transport ATP binding subunit (EC:3.6.3.32); K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
hypothetical protein n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI0002DC2618
Glycine/betaine ABC transporter ATPase {ECO:0000313|EMBL:KHL15773.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
scnpilot_solids1_trim150_scaffold_378_curated_10
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11099..12016
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI000368C2DD
Glycine/betaine ABC transporter {ECO:0000313|EMBL:EWT07433.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
glycine betaine transport system permease; K02001 glycine betaine/proline transport system permease protein
scnpilot_solids1_trim150_scaffold_378_curated_11
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12109..13152
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PDN8_9ACTO
Glycine/betaine ABC transporter substrate-binding protein {ECO:0000313|EMBL:EWT07434.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
glycine betaine ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_378_curated_12
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13361..14170
DNA (810bp) protein (270aa)
Transcriptional regulator, MerR family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7X1_NAKMY
Transcriptional regulator {ECO:0000313|EMBL:KDN84036.1}; TaxID=1348663 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC 2395.;"
MerR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_378_curated_13
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14284..15498)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7X3_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV80976.1}; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_378_curated_14
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15510..17033)
DNA (1524bp) protein (508aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7X5_NAKMY
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACV80978.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_378_curated_15
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17396..18688
DNA (1293bp) protein (431aa)
citrate synthase I (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Citrate synthase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7X6_NAKMY
scnpilot_solids1_trim150_scaffold_378_curated_16
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18752..19741)
DNA (990bp) protein (330aa)
yihR; aldose-1-epimerase (EC:5.1.3.3); K01785 aldose 1-epimerase [EC:5.1.3.3]
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000373D1D0
Contig_101, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01984.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
scnpilot_solids1_trim150_scaffold_378_curated_17
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19950..20648)
DNA (699bp) protein (233aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7Y0_NAKMY
scnpilot_solids1_trim150_scaffold_378_curated_18
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20688..21092)
DNA (405bp) protein (135aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1193518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
twitching motility protein PilT n=1 Tax=Glaciibacter superstes RepID=UPI0003B5B405
PilT protein domain-containing protein
scnpilot_solids1_trim150_scaffold_378_curated_19
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(21095..21367)
DNA (273bp) protein (91aa)
toxin-antitoxin system antitoxin subunit n=1 Tax=Glaciibacter superstes RepID=UPI0003B71B61
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ACU54540.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
scnpilot_solids1_trim150_scaffold_378_curated_20
unknown

Not on your lists

21488..21805
DNA (318bp) protein (106aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_378_curated_21
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22278..23327
DNA (1050bp) protein (350aa)
flagellin n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B457C2
flagellin domain protein; K02406 flagellin
Flagellin domain protein {ECO:0000313|EMBL:AEI10972.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
scnpilot_solids1_trim150_scaffold_378_curated_22
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23460..24431
DNA (972bp) protein (324aa)
flagellin n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B457C2
flagellin domain-containing protein; K02406 flagellin
Flagellin domain protein {ECO:0000313|EMBL:ACU36294.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
scnpilot_solids1_trim150_scaffold_378_curated_23
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24722..26074
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B549A2
Flagellar capping protein {ECO:0000313|EMBL:EXG80984.1}; Flags: Precursor;; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
flagellar hook-associated 2 domain-containing protein; K02407 flagellar hook-associated protein 2
scnpilot_solids1_trim150_scaffold_378_curated_24
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26258..27193
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XQ96_MICPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK36927.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
scnpilot_solids1_trim150_scaffold_378_curated_25
unknown

Not on your lists

27362..27766
DNA (405bp) protein (135aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_378_curated_26
unknown

Not on your lists

27771..28376
DNA (606bp) protein (202aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_378_curated_27
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28663..29013
DNA (351bp) protein (117aa)
flagellar basal-body rod protein FlgB n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B4E412
flagellar basal-body rod protein FlgB
Flagellar basal-body rod protein FlgB {ECO:0000313|EMBL:AGL21203.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
scnpilot_solids1_trim150_scaffold_378_curated_28
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29025..29432
DNA (408bp) protein (136aa)
flagellar basal body rod protein FlgG n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5763E
flgC; putative flagellar basal-body rod protein; K02388 flagellar basal-body rod protein FlgC
Putative flagellar basal-body rod protein {ECO:0000313|EMBL:BAL92844.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
scnpilot_solids1_trim150_scaffold_378_curated_29
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29436..29795
DNA (360bp) protein (120aa)
flagellar hook-basal body protein FliE n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5AF5C
flagellar hook-basal body complex subunit FliE; K02408 flagellar hook-basal body complex protein FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
scnpilot_solids1_trim150_scaffold_378_curated_30
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29816..31441
DNA (1626bp) protein (542aa)
flagellar M-ring protein FliF n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B505A8
fliF; putative flagellar M-ring protein
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
Displaying items 1-30 of 108 in total

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