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berkeley_reactor_200306_planktonic_scaffold_112900

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_112900_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

135..1604
DNA (1470bp) protein (490aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMU8_9BACT
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:EEF58873.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
outer membrane lipoprotein
berkeley_reactor_200306_planktonic_scaffold_112900_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1752..2114
DNA (363bp) protein (121aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBN4_9BACT
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EEF62919.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glyoxalase/bleomycin resistance protein/dioxygenase
berkeley_reactor_200306_planktonic_scaffold_112900_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2263..3162
DNA (900bp) protein (300aa)
PfkB domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ77_9BACT
PfkB domain protein {ECO:0000313|EMBL:EEF57995.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ydjH; PfkB family kinase
berkeley_reactor_200306_planktonic_scaffold_112900_4
unknown

Not on your lists

3536..3652
DNA (117bp) protein (39aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_112900_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3645..4427)
DNA (783bp) protein (261aa)
Chorismate dehydratase {ECO:0000256|HAMAP-Rule:MF_00995}; EC=4.2.1.151 {ECO:0000256|HAMAP-Rule:MF_00995};; Menaquinone biosynthetic enzyme MqnA {ECO:0000256|HAMAP-Rule:MF_00995}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCT8_9BACT
periplasmic solute-binding protein
berkeley_reactor_200306_planktonic_scaffold_112900_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(4424..5923)
DNA (1500bp) protein (500aa)
Outer membrane efflux protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJM0_9BACT
Outer membrane efflux protein {ECO:0000313|EMBL:EEF59896.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative outer membrane efflux protein
berkeley_reactor_200306_planktonic_scaffold_112900_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5967..7277)
DNA (1311bp) protein (437aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Trigger factor n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKB4_9BACT
trigger factor
berkeley_reactor_200306_planktonic_scaffold_112900_8
Leuconostoc kimchii, Leuconostoc, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7372..8088
DNA (717bp) protein (239aa)
bioD; dithiobiotin synthetase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=762051 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Leuconostocaceae; Leuconostoc.;" source="Leuconostoc kimchii (strain IMSNU 11154 / KCTC 2386 / IH25).;"
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Leuconostoc kimchii (strain IMSNU 11154 / KCTC 2386 / IH25) RepID=D5T2T9_LEUKI
berkeley_reactor_200306_planktonic_scaffold_112900_9
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8160..10223)
DNA (2064bp) protein (688aa)
TPR repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBT7_9BACT
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
berkeley_reactor_200306_planktonic_scaffold_112900_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10314..11099
DNA (786bp) protein (262aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKH6_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EEF59646.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
MotA/TolQ/ExbB proton channel
berkeley_reactor_200306_planktonic_scaffold_112900_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11210..11626
DNA (417bp) protein (139aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKH5_9BACT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EEF59645.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
biopolymer transport protein ExbD/TolR
berkeley_reactor_200306_planktonic_scaffold_112900_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11623..12546
DNA (924bp) protein (308aa)
TonB family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKH4_9BACT
TonB family protein {ECO:0000313|EMBL:EEF59644.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_112900_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12543..13718
DNA (1176bp) protein (392aa)
WD40 domain protein beta Propeller n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKH3_9BACT
WD40 domain protein beta Propeller {ECO:0000313|EMBL:EEF59643.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tolB; Periplasmic component of the Tol biopolymer transport system
berkeley_reactor_200306_planktonic_scaffold_112900_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13783..14403
DNA (621bp) protein (207aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKH2_9BACT
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EEF59642.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptidoglycan-associated lipoprotein
berkeley_reactor_200306_planktonic_scaffold_112900_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14509..14781
DNA (273bp) protein (91aa)
Sec-independent protein translocase protein TatA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKH1_9BACT
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
twin-arginine translocation protein TatA
berkeley_reactor_200306_planktonic_scaffold_112900_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14802..15893
DNA (1092bp) protein (364aa)
Sec-independent protein translocase protein TatC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKH0_9BACT
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Sec-independent protein translocase subunit TatC
berkeley_reactor_200306_planktonic_scaffold_112900_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15956..16393
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKG8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59638.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_112900_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16460..17332
DNA (873bp) protein (291aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKG7_9BACT
berkeley_reactor_200306_planktonic_scaffold_112900_19

Not on your lists

comp(17430..19001)
DNA (1572bp) protein (524aa)
Integral membrane protein MviN n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJM6_9BACT
Integral membrane protein MviN {ECO:0000313|EMBL:AIA18464.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
mviN; membrane protein MviN
berkeley_reactor_200306_planktonic_scaffold_112900_20
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19067..20587)
DNA (1521bp) protein (507aa)
AAA ATPase central domain protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C4F5_NITHN
ATPase AAA
AAA ATPase central domain protein {ECO:0000313|EMBL:ADE15139.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
berkeley_reactor_200306_planktonic_scaffold_112900_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20697..21986
DNA (1290bp) protein (430aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tyrosyl-tRNA synthase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHF6_9BACT
berkeley_reactor_200306_planktonic_scaffold_112900_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(22064..22801)
DNA (738bp) protein (246aa)
putative Astacin (Astacus proteinase, Crayfish small-molecule proteinase) (EC:3.4.24.21)
Peptidase M12A astacin n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSD7_9BACT
Peptidase M12A astacin {ECO:0000313|EMBL:EEF57237.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_112900_23
R_Gammaproteobacteria_43_28, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22907..23125)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=mine drainage metagenome RepID=T1AD35_9ZZZZ
translation initiation factor IF-1
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_43_28_curated
berkeley_reactor_200306_planktonic_scaffold_112900_24
unknown

Not on your lists

23240..23506
DNA (267bp) protein (89aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_112900_25
unknown

Not on your lists

23511..23846
DNA (336bp) protein (112aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_112900_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(23860..24252)
DNA (393bp) protein (131aa)
Lipid A biosynthesis domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPQ0_9BACT
Lipid A biosynthesis domain protein {ECO:0000313|EMBL:EEF58173.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
membrane protein
berkeley_reactor_200306_planktonic_scaffold_112900_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(24350..24553)
DNA (204bp) protein (68aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPP0_9BACT
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:EEF58163.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
thiamine biosynthesis protein ThiS
berkeley_reactor_200306_planktonic_scaffold_112900_28
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24821..26227)
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036005C9
glucose/galactose transporter
Tax=GWF2_Bacteroidetes_33_38_curated
berkeley_reactor_200306_planktonic_scaffold_112900_29
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26358..27776)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K7R5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH00168.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
berkeley_reactor_200306_planktonic_scaffold_112900_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(27926..30139)
DNA (2214bp) protein (738aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK83_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59721.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying items 1-30 of 34 in total

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