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BD02T64_Gammaproteobacteria_43_57_partial

BD02T64_Gammaproteobacteria_43_57
In projects: BD02T64

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: BD02T64_UNK

Properties

Avg. coverage: 57.25 Longest contig: 138.77 Kbp Bin length: 5.81 Mbp GC content: 42.94 %
Contigs count: 204 Features count: 4943 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 25 / 55 MC: 3 BSCG 27 / 51 MC: 2 ASCG 13 / 38 MC: 2
Displaying items 101-150 of 204 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
BD02T64_scaffold_2359
Class: Gammaproteobacteria (57.89%)
19 18653 bp 43.77 57.08 92.48
BD02T64_scaffold_1446
Class: Gammaproteobacteria (96%)
25 27724 bp 44.27 57.03 90.63
BD02T64_scaffold_1528
Class: Gammaproteobacteria (65.38%)
26 27990 bp 43.43 57.03 89.07
BD02T64_scaffold_1193
Class: Gammaproteobacteria (71.43%)
35 34908 bp 43.83 57.02 86.41
BD02T64_scaffold_3003
Class: Gammaproteobacteria (82.35%)
17 18390 bp 42.95 57.01 85.81
BD02T64_scaffold_5563
Class: Gammaproteobacteria (83.33%)
6 8078 bp 43.08 56.95 93.81
BD02T64_scaffold_7740
Class: Gammaproteobacteria (50%)
6 7557 bp 44.09 56.87 86.98
BD02T64_scaffold_1196
Class: Gammaproteobacteria (63.16%)
38 46081 bp 42.34 56.86 90.64
BD02T64_scaffold_1461
Class: Gammaproteobacteria (92.31%)
26 28370 bp 45.12 56.83 92.38
BD02T64_scaffold_1228
Class: Gammaproteobacteria (63.41%)
41 48803 bp 42.99 56.82 87.12
BD02T64_scaffold_853
Class: Gammaproteobacteria (52.63%)
38 41153 bp 42.69 56.80 87.72
BD02T64_scaffold_2023
Class: Gammaproteobacteria (90%)
30 29697 bp 42.76 56.79 90.55
BD02T64_scaffold_1713
Class: Gammaproteobacteria (87.76%)
49 58771 bp 43.97 56.79 89.41
BD02T64_scaffold_4343
Class: Gammaproteobacteria (90.91%)
11 10492 bp 43.84 56.76 94.07
BD02T64_scaffold_2185
Class: Gammaproteobacteria (78.79%)
33 33500 bp 43.39 56.75 91.24
BD02T64_scaffold_3610
Class: Gammaproteobacteria (91.89%)
37 39480 bp 43.43 56.74 88.99
BD02T64_scaffold_1613
Class: Gammaproteobacteria (78.79%)
33 42284 bp 43.73 56.74 92.24
BD02T64_scaffold_894
Class: Gammaproteobacteria (75%)
16 49137 bp 43.47 56.73 94.35
BD02T64_scaffold_1067
Class: Gammaproteobacteria (73%)
100 110318 bp 42.49 56.71 90.36
BD02T64_scaffold_651
Class: Gammaproteobacteria (68.57%)
35 47680 bp 41.60 56.71 91.16
BD02T64_scaffold_517
Class: Gammaproteobacteria (71.7%)
53 54634 bp 42.82 56.67 91.34
BD02T64_scaffold_4849
Class: Gammaproteobacteria (60%)
10 9323 bp 41.40 56.62 86.05
BD02T64_scaffold_530
Class: Gammaproteobacteria (76.81%)
69 73810 bp 43.73 56.57 90.24
BD02T64_scaffold_964
Class: Gammaproteobacteria (57.89%)
19 54091 bp 42.51 56.47 94.73
BD02T64_scaffold_202
Class: Gammaproteobacteria (64.13%)
92 128019 bp 42.52 56.47 94.14
BD02T64_scaffold_3418
Class: Gammaproteobacteria (65.52%)
29 37512 bp 42.53 56.45 88.79
BD02T64_scaffold_5236
Class: Gammaproteobacteria (83.33%)
6 8611 bp 43.67 56.44 92.71
BD02T64_scaffold_986
Class: Gammaproteobacteria (84.62%)
39 47354 bp 42.90 56.43 92.98
BD02T64_scaffold_1616
Class: Gammaproteobacteria (55%)
20 25826 bp 42.89 56.40 88.16
BD02T64_scaffold_1977
Class: Gammaproteobacteria (60.87%)
23 21597 bp 43.08 56.38 91.03
BD02T64_scaffold_8779
Species: gamma proteobacterium HdN1 (80%)
5 4903 bp 46.83 56.38 94.04
BD02T64_scaffold_2668
Class: Gammaproteobacteria (53.85%)
13 16712 bp 43.04 56.38 91.71
BD02T64_scaffold_2148
Class: Gammaproteobacteria (66.67%)
21 20204 bp 42.64 56.29 91.42
BD02T64_scaffold_11912
Class: Gammaproteobacteria (66.67%)
3 3527 bp 46.02 56.22 92.29
BD02T64_scaffold_359
Class: Gammaproteobacteria (75.56%)
45 68258 bp 43.01 56.21 90.64
BD02T64_scaffold_9233
Species: gamma proteobacterium HdN1 (100%)
1 8096 bp 42.53 56.14 99.98
BD02T64_scaffold_823
Class: Gammaproteobacteria (71.43%)
35 41542 bp 44.74 56.13 88.04
BD02T64_scaffold_3623
Class: Gammaproteobacteria (80%)
20 24283 bp 41.66 56.04 85.57
BD02T64_scaffold_3750
Class: Gammaproteobacteria (69.23%)
39 40332 bp 42.93 56.00 89.92
BD02T64_scaffold_9393
Class: Gammaproteobacteria (57.14%)
7 4580 bp 40.44 56.00 79.52
BD02T64_scaffold_5526
Phylum: Proteobacteria (60%)
10 8142 bp 43.49 55.99 85.81
BD02T64_scaffold_4002
Class: Gammaproteobacteria (92.31%)
13 11441 bp 44.06 55.97 82.02
BD02T64_scaffold_1174
Class: Gammaproteobacteria (50.63%)
79 95207 bp 43.38 55.93 91.46
BD02T64_scaffold_773
Species: gamma proteobacterium HdN1 (51.28%)
39 68111 bp 42.97 55.89 92.54
BD02T64_scaffold_2506
Class: Gammaproteobacteria (100%)
14 17685 bp 45.31 55.79 92.43
BD02T64_scaffold_441
Class: Gammaproteobacteria (61.45%)
83 105542 bp 43.26 55.78 90.61
BD02T64_scaffold_3297
Class: Gammaproteobacteria (66.67%)
9 13832 bp 42.58 55.76 90.44
BD02T64_scaffold_551
Class: Gammaproteobacteria (52.94%)
85 91979 bp 42.69 55.75 87.99
BD02T64_scaffold_3077
Class: Gammaproteobacteria (86.67%)
15 14786 bp 44.37 55.74 88.20
BD02T64_scaffold_7717
Class: Gammaproteobacteria (62.5%)
8 5647 bp 44.68 55.68 83.14
Displaying items 101-150 of 204 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.