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CN-SCN_Sphingopyxis_31x

CN-SCN_Sphingopyxis_67_31
In projects: CN-SCN

Consensus taxonomy: Sphingopyxis  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 31.29 Longest contig: 194.06 Kbp Bin length: 5.14 Mbp GC content: 66.53 %
Contigs count: 232 Features count: 5000 rRNAs count: 0 tRNAs count: 46

Genome completeness

megabin RP 48 / 55 MC: 32 BSCG 47 / 51 MC: 31 ASCG 12 / 38 MC: 5

Description

Partial double 70

Displaying items 51-100 of 232 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_12068 SPHP32_154
Species: Sphingopyxis sp. MC1 (100%)
7 5286 bp 68.12 32.94 88.59
cn_combo_scaffold_574 SPHP32_9
Genus: Sphingopyxis (79.1%)
67 71113 bp 67.87 31.87 88.65
cn_combo_scaffold_7594 SPHP32_83
Species: Sphingopyxis fribergensis (71.43%)
7 8125 bp 61.06 43.25 88.76
cn_combo_scaffold_1407 SPHP32_203
Genus: Sphingopyxis (50.77%)
65 61783 bp 64.06 22.07 88.78
cn_combo_scaffold_635 SPHP32_196
Order: Sphingomonadales (70.83%)
72 79174 bp 64.23 46.21 88.79
cn_combo_scaffold_9326 SPHP32_111
Species: Sphingopyxis sp. MC1 (100%)
9 6729 bp 67.41 38.65 88.81
cn_combo_scaffold_4213 SPHP32_56
Genus: Sphingopyxis (73.33%)
15 19195 bp 65.37 19.25 88.87
cn_combo_scaffold_8727 SPHP32_107
Species: Sphingopyxis sp. MC1 (100%)
12 7190 bp 64.67 40.72 88.92
cn_combo_scaffold_1180 SPHP32_21
Genus: Sphingopyxis (85.42%)
48 41909 bp 68.10 35.35 88.95
cn_combo_scaffold_285 SPHP32_2
Genus: Sphingopyxis (58.49%)
106 108316 bp 65.02 28.96 89.02
cn_combo_scaffold_1451 SPHP32_27
Genus: Sphingopyxis (82.86%)
35 36130 bp 64.56 33.72 89.15
cn_combo_scaffold_1879 SPHP32_33
Genus: Sphingopyxis (87.88%)
33 29162 bp 67.51 31.86 89.17
cn_combo_scaffold_11886 SPHP32_223
Species: Sphingopyxis sp. MC1 (100%)
3 5362 bp 63.95 26.74 89.18
cn_combo_scaffold_8193 SPHP32_100
Species: Sphingopyxis sp. MC1 (100%)
10 7600 bp 65.78 37.21 89.41
cn_combo_scaffold_1738 SPHP32_32
Genus: Sphingopyxis (64.58%)
48 55684 bp 66.70 27.94 89.42
cn_combo_scaffold_12488 SPHP32_160
Species: Sphingopyxis sp. MC1 (100%)
7 5127 bp 65.42 32.09 89.53
cn_combo_scaffold_4238 SPHP32_188
Species: Sphingopyxis sp. MC1 (50%)
12 13821 bp 63.49 21.55 89.65
cn_combo_scaffold_2757 SPHP32_43
Genus: Sphingopyxis (52.94%)
17 20313 bp 67.37 29.32 89.78
cn_combo_scaffold_7145 SPHP32_75
Species: Sphingopyxis sp. MC1 (80%)
10 8556 bp 64.21 29.36 89.84
cn_combo_scaffold_3471 SPHP32_50
Species: Sphingopyxis sp. MC1 (53.33%)
15 16545 bp 66.72 30.57 89.95
cn_combo_scaffold_15041 SPHP32_175
Species: Sphingopyxis sp. MC1 (83.33%)
6 7133 bp 64.62 37.82 89.96
cn_combo_scaffold_11940 SPHP32_150
Species: Sphingopyxis sp. MC1 (100%)
7 5340 bp 62.40 36.99 90.06
cn_combo_scaffold_969 SPHP32_16
Genus: Sphingopyxis (64.71%)
51 49493 bp 67.92 31.58 90.11
cn_combo_scaffold_6968 SPHP32_192
Species: Sphingopyxis sp. MC1 (100%)
8 8765 bp 63.73 22.68 90.22
cn_combo_scaffold_646 SPHP32_198
Order: Sphingomonadales (53.97%)
63 65045 bp 64.82 28.06 90.28
cn_combo_scaffold_11194 SPHP32_142
Species: Sphingopyxis sp. MC1 (88.89%)
9 5677 bp 66.16 34.23 90.31
cn_combo_scaffold_2351 SPHP32_41
Genus: Sphingopyxis (60%)
30 37036 bp 68.77 36.09 90.32
cn_combo_scaffold_17543 SPHP32_182
Species: Sphingopyxis sp. MC1 (83.33%)
6 6222 bp 63.18 23.47 90.36
cn_combo_scaffold_1415 SPHP32_26
Order: Sphingomonadales (95.16%)
62 63662 bp 68.08 30.26 90.40
cn_combo_scaffold_303 SPHP32_3
Genus: Sphingopyxis (64.58%)
96 118417 bp 68.00 34.38 90.42
cn_combo_scaffold_10473 SPHP32_133
Species: Sphingopyxis sp. MC1 (85.71%)
7 6048 bp 62.90 35.40 90.48
cn_combo_scaffold_9414 SPHP32_113
Species: Sphingopyxis sp. MC1 (100%)
8 6671 bp 66.63 31.75 90.48
cn_combo_scaffold_1679 SPHP32_31
Genus: Sphingopyxis (82.98%)
47 50762 bp 68.42 32.83 90.50
cn_combo_scaffold_12805 SPHP32_234
Species: Sphingopyxis sp. MC1 (100%)
6 5015 bp 65.58 31.61 90.51
cn_combo_scaffold_3105 SPHP32_47
Genus: Sphingopyxis (70%)
20 19779 bp 68.13 38.95 90.55
cn_combo_scaffold_599 SPHP32_10
Order: Sphingomonadales (73.24%)
71 68182 bp 67.55 33.19 90.55
cn_combo_scaffold_5860 SPHP32_64
Genus: Sphingopyxis (86.36%)
22 19265 bp 63.44 34.16 90.60
cn_combo_scaffold_1409 SPHP32_189
Order: Sphingomonadales (61.76%)
34 36620 bp 66.24 32.80 90.62
cn_combo_scaffold_7715 SPHP32_88
Species: Sphingopyxis sp. MC1 (88.89%)
9 8003 bp 64.46 35.82 90.64
cn_combo_scaffold_589 SPHP32_11
Genus: Sphingopyxis (65.56%)
90 80786 bp 67.22 29.09 90.70
cn_combo_scaffold_234 SPHP32_1
Genus: Sphingopyxis (74.53%)
161 171904 bp 67.47 31.50 90.71
cn_combo_scaffold_1023 SPHP32_18
Genus: Sphingopyxis (65.85%)
41 47211 bp 67.08 33.12 90.75
cn_combo_scaffold_2000 SPHP32_35
Genus: Sphingopyxis (74.07%)
27 27358 bp 64.54 30.55 90.75
cn_combo_scaffold_792 SPHP32_14
Genus: Sphingopyxis (56%)
50 57231 bp 68.02 30.92 90.75
cn_combo_scaffold_3158 SPHP32_49
Genus: Sphingopyxis (61.9%)
21 18079 bp 66.45 29.06 90.78
cn_combo_scaffold_10466 SPHP32_131
Species: Sphingopyxis sp. LC81 (50%)
6 6051 bp 64.91 11.37 90.93
cn_combo_scaffold_12524 SPHP32_162
Species: Sphingopyxis sp. MC1 (100%)
5 5113 bp 64.78 33.78 90.94
cn_combo_scaffold_866 SPHP32_201
Order: Sphingomonadales (72%)
100 120081 bp 67.14 35.97 90.97
cn_combo_scaffold_2818 SPHP32_44
Genus: Sphingopyxis (81.25%)
16 19933 bp 67.57 29.43 90.98
cn_combo_scaffold_3575 SPHP32_52
Genus: Sphingopyxis (90.91%)
11 16088 bp 67.73 31.15 90.98
Displaying items 51-100 of 232 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.