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SCNpilot_cont_500_bf_scaffold_629

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_629_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..497
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYG0_9RHIZ
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EYR83979.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11901 type VI secretion system protein ImpB
SCNpilot_cont_500_bf_scaffold_629_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

958..1923
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83978.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
SCNpilot_cont_500_bf_scaffold_629_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1936..3504
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83977.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC rbh
SCNpilot_cont_500_bf_scaffold_629_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3506..4006
DNA (501bp) protein (167aa)
Type VI secretion system lysozyme-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG6_9RHIZ
Type VI secretion system lysozyme-like protein {ECO:0000313|EMBL:EYR83976.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type VI secretion system lysozyme-like protein; K11897 type VI secretion system protein ImpF
SCNpilot_cont_500_bf_scaffold_629_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4011..4793)
DNA (783bp) protein (261aa)
serine/threonine protein kinase (EC:2.7.11.17); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003673397
Protein kinase domain-containing protein {ECO:0000313|EMBL:EYR83998.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_629_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4796..6340)
DNA (1545bp) protein (515aa)
Methylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ40_9RHIZ
Methylase {ECO:0000313|EMBL:EYR83997.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
methylase
SCNpilot_cont_500_bf_scaffold_629_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6373..7464)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000366F85F
Type VI secretion protein, VC_A0111 family {ECO:0000313|EMBL:EYR83996.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11895 type VI secretion system protein ImpH
SCNpilot_cont_500_bf_scaffold_629_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7428..9257)
DNA (1830bp) protein (610aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWX7_9RHIZ
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EYR83995.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11896 type VI secretion system protein ImpG
SCNpilot_cont_500_bf_scaffold_629_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9257..12820)
DNA (3564bp) protein (1188aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003817D21 rbh
Type VI secretion protein IcmF {ECO:0000313|EMBL:EYR83994.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative Type VI secretion protein IcmF-like; K11891 type VI secretion system protein ImpL
SCNpilot_cont_500_bf_scaffold_629_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12817..14625)
DNA (1809bp) protein (603aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000371E5AA rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83993.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_629_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14627..16099)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEL4_9RHIZ
Type IV / VI secretion system protein, DotU family {ECO:0000313|EMBL:EYR83992.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_629_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16113..17450)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C9A3D
Type VI secretion protein, VC_A0114 family {ECO:0000313|EMBL:EYR83991.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11893 type VI secretion system protein ImpJ
SCNpilot_cont_500_bf_scaffold_629_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17492..17998)
DNA (507bp) protein (169aa)
Type VI secretion lipoprotein, VC_A0113 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDC8_9RHIZ
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:EYR83990.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11906 type VI secretion system protein VasD
SCNpilot_cont_500_bf_scaffold_629_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18037..18726)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMQ0_9RHIZ
FHA domain-containing protein {ECO:0000313|EMBL:EYR83989.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FHA domain-containing protein; K11894 type VI secretion system protein ImpI
SCNpilot_cont_500_bf_scaffold_629_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18767..19840)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037228F1 rbh
Methyltransferase domain-containing protein {ECO:0000313|EMBL:EYR83988.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_629_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19872..20252)
DNA (381bp) protein (127aa)
PAAR repeat-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEM6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83987.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_629_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20271..21293)
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000372A1D3
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:EYR83986.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RsbW; anti-sigma regulatory factor
SCNpilot_cont_500_bf_scaffold_629_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21435..21764
DNA (330bp) protein (110aa)
Anti-anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFR6_9RHIZ
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
btrV; anti-sigma factor antagonist btrV
SCNpilot_cont_500_bf_scaffold_629_19
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22084..23442
DNA (1359bp) protein (453aa)
Tetratricopeptide TPR_2 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2P9M6_9RHIZ
Tetratricopeptide TPR_2 {ECO:0000313|EMBL:EKF57608.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_629_20
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23446..24303
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QRF1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF57607.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_629_21
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24380..26602
DNA (2223bp) protein (741aa)
adenylate cyclase (EC:4.6.1.1) rbh
Adenylate cyclase {ECO:0000313|EMBL:AGT11165.1}; EC=4.6.1.1 {ECO:0000313|EMBL:AGT11165.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Adenylate cyclase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y696_PARAH rbh
SCNpilot_cont_500_bf_scaffold_629_22
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26666..27034
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E7F42
hypothetical protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_500_bf_scaffold_629_23
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27396..28715)
DNA (1320bp) protein (440aa)
UPI0003CEFE79 related cluster n=1 Tax=unknown RepID=UPI0003CEFE79
Uncharacterized protein {ECO:0000313|EMBL:CDX15601.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_629_24
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28811..29170)
DNA (360bp) protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:KFG89724.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
SCNpilot_cont_500_bf_scaffold_629_25
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29995..30870
DNA (876bp) protein (292aa)
Aldose 1-epimerase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UNY6_METS4
aldose 1-epimerase
Aldose 1-epimerase {ECO:0000313|EMBL:ACA17594.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_629_26
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30878..31705
DNA (828bp) protein (276aa)
Periplasmic binding protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S7L8_9RHOB
Periplasmic binding protein {ECO:0000313|EMBL:KFE36372.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
substrate-binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_629_27
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31708..31944
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003680D59
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH89812.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_629_28
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32023..32562
DNA (540bp) protein (180aa)
UPI0003CE3EF3 related cluster n=1 Tax=unknown RepID=UPI0003CE3EF3
RNA polymerase sigma factor {ECO:0000313|EMBL:ESY68112.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_629_29
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32559..33293
DNA (735bp) protein (245aa)
UPI0003CF9842 related cluster n=1 Tax=unknown RepID=UPI0003CF9842
Anti-sigma K factor RskA {ECO:0000313|EMBL:ESY68111.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
anti-sigma K factor RskA
SCNpilot_cont_500_bf_scaffold_629_30
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33404..33967
DNA (564bp) protein (188aa)
fasciclin n=1 Tax=Hoeflea sp. 108 RepID=UPI00037AFA53
Uncharacterized protein {ECO:0000313|EMBL:CDX53335.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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