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SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

SCNPILOT_EXPT_1000_BF_Sphingomonas_67_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 51-100 of 416 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_2388
Genus: Sphingomonas (50%)
10 10372 bp 69.83 6.97 92.50
SCNpilot_expt_1000_bf_scaffold_4255
Species: Sphingomonas sp. WHSC-8 (64.29%)
14 10195 bp 68.19 6.96 92.81
SCNpilot_expt_1000_bf_scaffold_3109
Species: Sphingomonas sp. WHSC-8 (53.13%)
32 28862 bp 67.25 6.95 84.04
SCNpilot_expt_1000_bf_scaffold_4845
Order: Sphingomonadales (90.91%)
11 15000 bp 68.17 6.95 94.64
SCNpilot_expt_1000_bf_scaffold_3363
Genus: Sphingomonas (50%)
14 13177 bp 65.93 6.94 87.06
SCNpilot_expt_1000_bf_scaffold_5927
Species: Sphingomonas sp. WHSC-8 (83.33%)
12 11169 bp 69.23 6.94 82.27
SCNpilot_expt_1000_bf_scaffold_2839
Species: Sphingomonas sp. WHSC-8 (69.7%)
33 33014 bp 67.72 6.94 89.96
SCNpilot_expt_1000_bf_scaffold_1660
Species: Sphingomonas sp. WHSC-8 (61.9%)
21 23267 bp 67.32 6.94 85.52
SCNpilot_expt_1000_bf_scaffold_1408
Species: Sphingomonas sp. WHSC-8 (80.25%)
81 72934 bp 67.48 6.94 88.00
SCNpilot_expt_1000_bf_scaffold_9211
Genus: Sphingomonas (66.67%)
9 9772 bp 68.30 6.91 83.14
SCNpilot_expt_1000_bf_scaffold_4667
Class: Alphaproteobacteria (71.43%)
7 12154 bp 68.66 6.91 88.69
SCNpilot_expt_1000_bf_scaffold_8897
Class: Alphaproteobacteria (60%)
5 7272 bp 69.38 6.91 99.55
SCNpilot_expt_1000_bf_scaffold_3355
Class: Alphaproteobacteria (53.85%)
13 10428 bp 67.72 6.90 87.23
SCNpilot_expt_1000_bf_scaffold_2430
Genus: Sphingomonas (64%)
25 24751 bp 68.00 6.90 94.78
SCNpilot_expt_1000_bf_scaffold_3733
Species: Sphingomonas sp. WHSC-8 (70%)
20 17227 bp 68.60 6.88 84.15
SCNpilot_expt_1000_bf_scaffold_11755
Species: Sphingomonas sp. WHSC-8 (50%)
4 3706 bp 65.38 6.88 86.54
SCNpilot_expt_1000_bf_scaffold_4495
Genus: Sphingomonas (50%)
12 7708 bp 69.15 6.88 92.48
SCNpilot_expt_1000_bf_scaffold_2636
Genus: Sphingomonas (50%)
12 9662 bp 68.57 6.86 93.89
SCNpilot_expt_1000_bf_scaffold_13062
Order: Sphingomonadales (62.5%)
8 10775 bp 68.02 6.84 79.18
SCNpilot_expt_1000_bf_scaffold_37719
Species: Sphingomonas sp. WHSC-8 (100%)
3 2378 bp 67.41 6.83 70.27
SCNpilot_expt_1000_bf_scaffold_2988
Species: Sphingobium yanoikuyae (62.5%)
16 16286 bp 59.57 6.82 85.10
SCNpilot_expt_1000_bf_scaffold_1356
Species: Sphingomonas sp. WHSC-8 (55.42%)
83 83169 bp 67.12 6.82 88.88
SCNpilot_expt_1000_bf_scaffold_3128
Species: Sphingomonas sp. WHSC-8 (54.17%)
24 22936 bp 67.41 6.79 88.24
SCNpilot_expt_1000_bf_scaffold_3340
Order: Sphingomonadales (70%)
20 19389 bp 67.64 6.78 85.55
SCNpilot_expt_1000_bf_scaffold_2991
Species: Sphingomonas sp. WHSC-8 (68.18%)
22 17504 bp 68.17 6.78 91.69
SCNpilot_expt_1000_bf_scaffold_5935
Species: Sphingomonas sp. WHSC-8 (50%)
14 12127 bp 68.31 6.78 91.75
SCNpilot_expt_1000_bf_scaffold_3803
Species: Sphingomonas sp. WHSC-8 (50%)
38 26281 bp 68.32 6.78 90.35
SCNpilot_expt_1000_bf_scaffold_5182
Order: Sphingomonadales (68.18%)
22 19636 bp 68.40 6.76 85.36
SCNpilot_expt_1000_bf_scaffold_8687
Genus: Sphingomonas (57.58%)
33 29160 bp 67.25 6.75 80.69
SCNpilot_expt_1000_bf_scaffold_2889
Species: Sphingomonas sp. WHSC-8 (54.17%)
24 27039 bp 66.57 6.73 86.06
SCNpilot_expt_1000_bf_scaffold_18579
Phylum: Proteobacteria (66.67%)
3 2230 bp 66.86 6.73 84.48
SCNpilot_expt_1000_bf_scaffold_2622
Species: Sphingomonas sp. WHSC-8 (85%)
20 14366 bp 67.91 6.72 95.12
SCNpilot_expt_1000_bf_scaffold_3789
Species: Sphingomonas sp. WHSC-8 (71.43%)
21 20124 bp 68.57 6.71 83.80
SCNpilot_expt_1000_bf_scaffold_18927
Order: Sphingomonadales (60%)
10 8631 bp 64.99 6.69 71.95
SCNpilot_expt_1000_bf_scaffold_11771
Species: Sphingomonas sp. WHSC-8 (50%)
6 6057 bp 66.22 6.69 92.67
SCNpilot_expt_1000_bf_scaffold_5616
Genus: Sphingobium (55.56%)
9 7297 bp 65.99 6.65 91.06
SCNpilot_expt_1000_bf_scaffold_8989
Species: Sphingomonas sp. WHSC-8 (80%)
5 4622 bp 67.33 6.65 90.48
SCNpilot_expt_1000_bf_scaffold_8489
Species: Sphingomonas sp. WHSC-8 (66.67%)
27 22021 bp 66.65 6.65 81.33
SCNpilot_expt_1000_bf_scaffold_9232
Genus: Sphingopyxis (50%)
4 3923 bp 68.75 6.63 96.66
SCNpilot_expt_1000_bf_scaffold_7673
Class: Alphaproteobacteria (70%)
10 6160 bp 63.81 6.62 86.79
SCNpilot_expt_1000_bf_scaffold_2124
Genus: Sphingomonas (55%)
20 17022 bp 67.89 6.62 88.44
SCNpilot_expt_1000_bf_scaffold_26737
Species: Sphingomonas sanxanigenens (66.67%)
3 2989 bp 70.22 6.61 98.96
SCNpilot_expt_1000_bf_scaffold_5212
Class: Alphaproteobacteria (68.42%)
19 14984 bp 66.63 6.61 80.89
SCNpilot_expt_1000_bf_scaffold_1446
Species: Sphingomonas sp. WHSC-8 (68.42%)
38 31633 bp 67.13 6.61 89.22
SCNpilot_expt_1000_bf_scaffold_17659
Genus: Sphingomonas (50%)
8 6514 bp 67.09 6.60 87.23
SCNpilot_expt_1000_bf_scaffold_1827
Order: Sphingomonadales (63.79%)
58 55485 bp 67.73 6.60 85.73
SCNpilot_expt_1000_bf_scaffold_3544
Order: Sphingomonadales (50%)
26 36423 bp 67.86 6.60 85.54
SCNpilot_expt_1000_bf_scaffold_6303
Species: Sphingomonas sp. WHSC-8 (57.14%)
7 7393 bp 69.43 6.59 92.40
SCNpilot_expt_1000_bf_scaffold_9393
Class: Alphaproteobacteria (66.67%)
3 4364 bp 66.75 6.59 83.52
SCNpilot_expt_1000_bf_scaffold_5097
Species: Sphingomonas sp. WHSC-8 (66.67%)
6 6601 bp 66.96 6.59 84.71
Displaying items 51-100 of 416 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.