ggKbase home page

SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

SCNPILOT_EXPT_1000_BF_Sphingomonas_67_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 151-200 of 416 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_2424
Order: Sphingomonadales (58.54%)
41 36514 bp 64.35 6.24 80.69
SCNpilot_expt_1000_bf_scaffold_9858
Genus: Sphingobium (72.73%)
11 6940 bp 64.28 6.23 92.29
SCNpilot_expt_1000_bf_scaffold_2204
Genus: Sphingomonas (55%)
20 19273 bp 67.48 6.23 90.16
SCNpilot_expt_1000_bf_scaffold_8892
Species: Sphingopyxis sp. LC81 (66.67%)
3 4491 bp 63.75 6.23 84.77
SCNpilot_expt_1000_bf_scaffold_2519
Class: Alphaproteobacteria (51.85%)
27 32277 bp 66.71 6.22 86.39
SCNpilot_expt_1000_bf_scaffold_5522
Species: Sphingomonas sp. WHSC-8 (85.19%)
27 20905 bp 67.36 6.22 84.44
SCNpilot_expt_1000_bf_scaffold_5019
Genus: Sphingomonas (54.55%)
11 10330 bp 66.90 6.22 78.88
SCNpilot_expt_1000_bf_scaffold_9344
Species: Sphingomonas sp. MM-1 (57.14%)
7 11144 bp 67.09 6.21 86.52
SCNpilot_expt_1000_bf_scaffold_4478
Order: Sphingomonadales (88%)
25 23115 bp 68.27 6.21 83.70
SCNpilot_expt_1000_bf_scaffold_3539
Species: Sphingobium baderi (75%)
8 7836 bp 63.26 6.19 94.64
SCNpilot_expt_1000_bf_scaffold_14249
Species: Sphingomonas taxi (66.67%)
6 8821 bp 68.26 6.18 91.55
SCNpilot_expt_1000_bf_scaffold_8609
Species: Sphingomonas sp. WHSC-8 (60%)
25 19187 bp 67.78 6.18 86.64
SCNpilot_expt_1000_bf_scaffold_9246
Species: Sphingomonas sp. WHSC-8 (50%)
12 10279 bp 64.87 6.18 75.77
SCNpilot_expt_1000_bf_scaffold_2722
Species: Sphingomonas sp. WHSC-8 (62.5%)
24 23324 bp 66.10 6.17 86.23
SCNpilot_expt_1000_bf_scaffold_6344
Species: Sphingomonas sp. WHSC-8 (62.5%)
8 6205 bp 68.51 6.16 96.60
SCNpilot_expt_1000_bf_scaffold_27083
Species: Sphingomonas sp. WHSC-8 (100%)
2 2191 bp 67.73 6.16 82.15
SCNpilot_expt_1000_bf_scaffold_2333
Species: Sphingomonas sp. WHSC-8 (54.55%)
11 14529 bp 67.62 6.16 95.77
SCNpilot_expt_1000_bf_scaffold_24102
Order: Sphingomonadales (100%)
6 3084 bp 67.44 6.16 95.62
SCNpilot_expt_1000_bf_scaffold_9777
Genus: Sphingomonas (62.5%)
8 5726 bp 66.08 6.16 84.25
SCNpilot_expt_1000_bf_scaffold_5052
Order: Sphingomonadales (62.5%)
16 13424 bp 65.17 6.15 82.71
SCNpilot_expt_1000_bf_scaffold_5434
Genus: Sphingomonas (80%)
10 7203 bp 69.12 6.14 95.79
SCNpilot_expt_1000_bf_scaffold_27185
Domain: Bacteria (57.14%)
7 7288 bp 63.93 6.14 77.22
SCNpilot_expt_1000_bf_scaffold_17813
Species: Sphingomonas sp. WHSC-8 (60%)
5 3379 bp 67.12 6.14 92.69
SCNpilot_expt_1000_bf_scaffold_4089
Species: Sphingomonas sp. WHSC-8 (83.33%)
18 10629 bp 67.42 6.12 88.12
SCNpilot_expt_1000_bf_scaffold_4401
Species: Sphingomonas sp. WHSC-8 (53.33%)
15 13760 bp 66.92 6.12 88.78
SCNpilot_expt_1000_bf_scaffold_2522
Order: Sphingomonadales (74.07%)
27 26565 bp 67.44 6.11 89.20
SCNpilot_expt_1000_bf_scaffold_1902
Genus: Sphingomonas (50%)
18 14814 bp 67.42 6.11 84.69
SCNpilot_expt_1000_bf_scaffold_12400
Class: Alphaproteobacteria (61.54%)
13 10084 bp 66.29 6.10 83.90
SCNpilot_expt_1000_bf_scaffold_9758
Genus: Sphingomonas (80%)
5 9224 bp 67.30 6.10 72.66
SCNpilot_expt_1000_bf_scaffold_6494
Order: Sphingomonadales (50%)
8 8909 bp 66.94 6.09 90.31
SCNpilot_expt_1000_bf_scaffold_6503
Species: Sphingomonas sp. WHSC-8 (83.33%)
12 11088 bp 68.06 6.09 89.94
SCNpilot_expt_1000_bf_scaffold_8763
Genus: Sphingomonas (57.14%)
7 7077 bp 65.17 6.08 82.70
SCNpilot_expt_1000_bf_scaffold_2587
Genus: Sphingomonas (56.52%)
23 22007 bp 64.96 6.08 88.58
SCNpilot_expt_1000_bf_scaffold_2348
Genus: Sphingomonas (50%)
14 17628 bp 66.15 6.07 87.53
SCNpilot_expt_1000_bf_scaffold_8738
Species: Sphingomonas sp. WHSC-8 (72.73%)
11 9526 bp 67.68 6.06 81.50
SCNpilot_expt_1000_bf_scaffold_7089
Order: Sphingomonadales (80%)
20 16452 bp 65.26 6.06 82.82
SCNpilot_expt_1000_bf_scaffold_14533
Species: Sphingomonas sp. WHSC-8 (55.56%)
9 5525 bp 68.22 6.06 86.93
SCNpilot_expt_1000_bf_scaffold_3546
Species: Sphingopyxis sp. LC81 (54.55%)
11 17705 bp 67.79 6.06 92.08
SCNpilot_expt_1000_bf_scaffold_5820
Order: Sphingomonadales (87.5%)
8 9788 bp 69.16 6.05 89.80
SCNpilot_expt_1000_bf_scaffold_14141
Species: Sphingomonas sp. WHSC-8 (80%)
5 3306 bp 70.69 6.05 97.64
SCNpilot_expt_1000_bf_scaffold_12889
Species: Sphingomonas sp. WHSC-8 (50%)
4 3021 bp 65.94 6.04 91.36
SCNpilot_expt_1000_bf_scaffold_11150 5 6003 bp 68.07 6.04 71.71
SCNpilot_expt_1000_bf_scaffold_11806
Genus: Sphingomonas (57.14%)
7 5191 bp 67.25 6.02 92.24
SCNpilot_expt_1000_bf_scaffold_5992
Genus: Sphingomonas (72.73%)
11 7146 bp 66.22 6.02 86.82
SCNpilot_expt_1000_bf_scaffold_3740
Genus: Sphingomonas (66.67%)
12 14664 bp 66.54 6.02 77.88
SCNpilot_expt_1000_bf_scaffold_3436
Species: Sphingomonas sp. WHSC-8 (66.67%)
12 9543 bp 68.71 6.00 87.49
SCNpilot_expt_1000_bf_scaffold_4147
Species: Sphingopyxis fribergensis (50%)
8 9830 bp 67.55 6.00 87.13
SCNpilot_expt_1000_bf_scaffold_12166
Order: Sphingomonadales (57.14%)
7 6092 bp 64.28 5.99 78.45
SCNpilot_expt_1000_bf_scaffold_2335
Species: Sphingomonas sp. WHSC-8 (75%)
16 15808 bp 67.31 5.99 87.70
SCNpilot_expt_1000_bf_scaffold_4686
Class: Alphaproteobacteria (60%)
10 9803 bp 66.36 5.99 87.03
Displaying items 151-200 of 416 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.