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SCNPILOT_CONT_300_BF_Rhizobiales_61_16

SCNPILOT_EXPT_1000_BF_Rhizobiales_61_5
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 4.77 Longest contig: 25.11 Kbp Bin length: 4.64 Mbp GC content: 60.72 %
Contigs count: 913 Features count: 5488 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Displaying items 251-300 of 913 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_32305
Class: Alphaproteobacteria (66.67%)
3 1952 bp 61.22 3.33 81.15
SCNpilot_expt_1000_bf_scaffold_7561
Order: Rhizobiales (60%)
5 5737 bp 62.30 4.53 81.16
SCNpilot_expt_1000_bf_scaffold_12453
Species: R_Alphaproteobacteria_66_14 (50%)
4 3104 bp 60.21 4.03 81.19
SCNpilot_expt_1000_bf_scaffold_12090
Genus: Bradyrhizobium (83.33%)
6 6556 bp 59.41 5.26 81.22
SCNpilot_expt_1000_bf_scaffold_9096
Class: Alphaproteobacteria (60%)
25 22495 bp 58.76 4.70 81.23
SCNpilot_expt_1000_bf_scaffold_22682
Species: Bosea sp. LC85 (50%)
2 1887 bp 58.72 5.56 81.24
SCNpilot_expt_1000_bf_scaffold_6254
Phylum: Proteobacteria (64.71%)
17 17434 bp 61.46 5.32 81.38
SCNpilot_expt_1000_bf_scaffold_10310
Phylum: Proteobacteria (71.43%)
7 8792 bp 59.50 4.38 81.41
SCNpilot_expt_1000_bf_scaffold_15976
Class: Betaproteobacteria (50%)
6 4793 bp 59.48 5.48 81.49
SCNpilot_expt_1000_bf_scaffold_9437
Order: Rhizobiales (64.29%)
14 10517 bp 62.15 4.28 81.58
SCNpilot_expt_1000_bf_scaffold_17329
Class: Alphaproteobacteria (50%)
4 3265 bp 62.02 3.91 81.59
SCNpilot_expt_1000_bf_scaffold_35353
Order: Rhizobiales (66.67%)
3 1301 bp 58.19 4.42 81.63
SCNpilot_expt_1000_bf_scaffold_19823
Class: Alphaproteobacteria (66.67%)
3 2961 bp 57.85 4.56 81.66
SCNpilot_expt_1000_bf_scaffold_10420
Order: Rhizobiales (60%)
5 4572 bp 58.20 4.37 81.69
SCNpilot_expt_1000_bf_scaffold_40533
Species: Rhodovulum sp. PH10 (100%)
2 1153 bp 60.10 2.82 81.70
SCNpilot_expt_1000_bf_scaffold_30542
Genus: Burkholderia (50%)
4 2798 bp 60.36 4.47 81.70
SCNpilot_expt_1000_bf_scaffold_20737
Class: Betaproteobacteria (50%)
10 7272 bp 57.52 4.81 81.72
SCNpilot_expt_1000_bf_scaffold_13085
Order: Rhizobiales (50%)
12 11115 bp 59.29 4.90 81.73
SCNpilot_expt_1000_bf_scaffold_16109
Order: Rhizobiales (100%)
5 2858 bp 62.67 4.37 81.88
SCNpilot_expt_1000_bf_scaffold_9505 7 5704 bp 58.73 4.82 81.89
SCNpilot_expt_1000_bf_scaffold_11279
Order: Rhizobiales (90.91%)
11 9700 bp 63.43 4.82 81.90
SCNpilot_expt_1000_bf_scaffold_16114
Phylum: Proteobacteria (60%)
10 6762 bp 60.62 4.88 81.94
SCNpilot_expt_1000_bf_scaffold_3534
Phylum: Proteobacteria (50%)
14 10229 bp 60.00 4.94 81.94
SCNpilot_expt_1000_bf_scaffold_20209
Class: Alphaproteobacteria (50%)
4 2079 bp 60.17 4.33 81.96
SCNpilot_expt_1000_bf_scaffold_10446
Order: Rhizobiales (60%)
5 4019 bp 55.71 3.79 82.04
SCNpilot_expt_1000_bf_scaffold_15650
Order: Rhizobiales (83.33%)
6 5713 bp 62.49 4.33 82.08
SCNpilot_expt_1000_bf_scaffold_5194
Order: Rhizobiales (80%)
10 9735 bp 62.93 5.75 82.10
SCNpilot_expt_1000_bf_scaffold_14777
Order: Rhizobiales (81.82%)
11 7857 bp 61.22 4.80 82.17
SCNpilot_expt_1000_bf_scaffold_9885 21 13036 bp 63.45 4.16 82.23
SCNpilot_expt_1000_bf_scaffold_4295
Order: Rhizobiales (81.82%)
11 7374 bp 60.55 4.75 82.26
SCNpilot_expt_1000_bf_scaffold_4506
Phylum: Proteobacteria (57.89%)
19 17364 bp 59.70 4.66 82.27
SCNpilot_expt_1000_bf_scaffold_14056
Order: Rhizobiales (85.71%)
7 5905 bp 60.83 3.90 82.30
SCNpilot_expt_1000_bf_scaffold_7432
Species: uncultured bacterium A1Q1_fos_75 (75%)
4 5163 bp 64.19 5.33 82.34
SCNpilot_expt_1000_bf_scaffold_21017
Phylum: Proteobacteria (50%)
6 4382 bp 59.81 5.08 82.36
SCNpilot_expt_1000_bf_scaffold_10481
Class: Alphaproteobacteria (64.71%)
17 11867 bp 59.53 4.40 82.44
SCNpilot_expt_1000_bf_scaffold_24661
Order: Rhizobiales (80%)
5 5118 bp 59.93 4.64 82.47
SCNpilot_expt_1000_bf_scaffold_10086
Order: Rhizobiales (66.67%)
6 4768 bp 61.01 4.82 82.49
SCNpilot_expt_1000_bf_scaffold_30509
Order: Rhizobiales (75%)
4 2519 bp 65.26 4.57 82.53
SCNpilot_expt_1000_bf_scaffold_8193
Order: Rhizobiales (100%)
3 4285 bp 63.13 6.18 82.54
SCNpilot_expt_1000_bf_scaffold_7888
Order: Rhizobiales (50%)
22 20709 bp 61.32 5.17 82.56
SCNpilot_expt_1000_bf_scaffold_21237
Species: R_Betaproteobacteria_62_17 (50%)
4 3056 bp 60.27 5.89 82.56
SCNpilot_expt_1000_bf_scaffold_2530
Order: Rhizobiales (50%)
18 11780 bp 56.61 4.29 82.56
SCNpilot_expt_1000_bf_scaffold_22037 9 4898 bp 57.27 4.49 82.63
SCNpilot_expt_1000_bf_scaffold_9756
Genus: Mesorhizobium (50%)
6 5162 bp 61.72 4.65 82.64
SCNpilot_expt_1000_bf_scaffold_14030
Order: Rhizobiales (75%)
8 6076 bp 62.79 5.31 82.70
SCNpilot_expt_1000_bf_scaffold_35918
Species: Afipia clevelandensis (50%)
2 1284 bp 62.93 3.89 82.71
SCNpilot_expt_1000_bf_scaffold_24467 5 4668 bp 58.33 3.96 82.71
SCNpilot_expt_1000_bf_scaffold_6677
Order: Rhizobiales (66.67%)
15 11887 bp 62.19 4.08 82.73
SCNpilot_expt_1000_bf_scaffold_32600
Species: Cupriavidus pinatubonensis (66.67%)
3 2027 bp 62.16 4.93 82.73
SCNpilot_expt_1000_bf_scaffold_45827
Species: Cupriavidus sp. SK-3 (50%)
2 1653 bp 60.13 3.93 82.76
Displaying items 251-300 of 913 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.