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SCNPILOT_EXPT_750_BF_Sphingobacteriia_40_10

SCNPILOT_EXPT_750_BF_Sphingobacteriales_40_10
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 10.05 Longest contig: 339.57 Kbp Bin length: 6.22 Mbp GC content: 40.06 %
Contigs count: 114 Features count: 5311 rRNAs count: 0 tRNAs count: 53

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Displaying items 1-50 of 114 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_18027
Species: Chitinophaga pinensis (100%)
2 2375 bp 43.03 6.74 102.32
scnpilot_expt_750_bf_scaffold_1523
Order: Sphingobacteriales (66.67%)
3 9177 bp 40.57 10.30 99.41
scnpilot_expt_750_bf_scaffold_1527
Order: Sphingobacteriales (66.67%)
3 9162 bp 41.24 9.30 99.31
scnpilot_expt_750_bf_scaffold_25255
Genus: Chryseobacterium (66.67%)
3 2058 bp 43.93 11.42 98.83
scnpilot_expt_750_bf_scaffold_2044
Species: Niastella koreensis (50%)
4 7254 bp 39.34 8.06 98.64
scnpilot_expt_750_bf_scaffold_778
Species: Niastella koreensis (66.67%)
6 21032 bp 42.98 10.51 97.48
scnpilot_expt_750_bf_scaffold_2381
Order: Sphingobacteriales (100%)
3 6501 bp 40.27 9.19 96.91
scnpilot_expt_750_bf_scaffold_2269
Species: Pedobacter antarcticus (57.14%)
7 7495 bp 42.67 6.67 96.70
scnpilot_expt_750_bf_scaffold_44316
Species: Leadbetterella byssophila (66.67%)
3 1319 bp 39.65 7.96 95.98
scnpilot_expt_750_bf_scaffold_14198
Phylum: Bacteroidetes (66.67%)
3 1900 bp 40.11 9.34 95.53
scnpilot_expt_750_bf_scaffold_31332
Species: Flavobacterium cauense (100%)
1 1049 bp 39.18 6.67 95.52
scnpilot_expt_750_bf_scaffold_1289
Class: Flavobacteriia (53.85%)
13 10814 bp 40.14 6.75 93.77
scnpilot_expt_750_bf_scaffold_677
Order: Sphingobacteriales (59.09%)
22 32836 bp 39.62 10.29 93.34
scnpilot_expt_750_bf_scaffold_1091
Order: Sphingobacteriales (58.33%)
12 12825 bp 38.95 9.84 93.05
scnpilot_expt_750_bf_scaffold_1832
Genus: Sphingobacterium (54.55%)
11 7923 bp 38.77 6.82 92.58
scnpilot_expt_750_bf_scaffold_5629
Genus: Sphingobacterium (54.55%)
11 6326 bp 41.08 6.56 92.10
scnpilot_expt_750_bf_scaffold_754
Order: Sphingobacteriales (52.63%)
19 21989 bp 41.51 10.62 91.90
scnpilot_expt_750_bf_scaffold_5437
Order: Sphingobacteriales (50%)
4 4870 bp 40.23 8.32 91.79
scnpilot_expt_750_bf_scaffold_423
Order: Sphingobacteriales (73.81%)
42 54471 bp 41.03 10.19 91.60
scnpilot_expt_750_bf_scaffold_20663
Genus: Sphingobacterium (80%)
5 2961 bp 37.39 8.19 91.29
scnpilot_expt_750_bf_scaffold_183
Order: Sphingobacteriales (61.15%)
139 175426 bp 40.18 11.03 91.12
scnpilot_expt_750_bf_scaffold_654
Phylum: Bacteroidetes (69.57%)
23 29048 bp 41.49 11.12 91.00
scnpilot_expt_750_bf_scaffold_519
Order: Sphingobacteriales (78.72%)
47 61143 bp 40.77 9.99 90.82
scnpilot_expt_750_bf_scaffold_9928
Order: Sphingobacteriales (60%)
5 3739 bp 40.01 10.43 90.59
scnpilot_expt_750_bf_scaffold_503
Phylum: Bacteroidetes (60.61%)
66 83342 bp 38.57 9.73 90.44
scnpilot_expt_750_bf_scaffold_2881
Species: Elizabethkingia miricola (60%)
10 10195 bp 40.13 7.63 90.43
scnpilot_expt_750_bf_scaffold_963
Order: Sphingobacteriales (61.54%)
13 17775 bp 39.71 9.58 90.36
scnpilot_expt_750_bf_scaffold_31895
Species: Elizabethkingia meningoseptica (50%)
2 1833 bp 40.04 8.59 90.18
scnpilot_expt_750_bf_scaffold_433
Order: Sphingobacteriales (69.81%)
106 125275 bp 39.88 9.69 90.14
scnpilot_expt_750_bf_scaffold_858
Order: Sphingobacteriales (62.75%)
51 60316 bp 40.91 10.77 90.11
scnpilot_expt_750_bf_scaffold_658
Order: Sphingobacteriales (57.69%)
26 28887 bp 40.44 10.45 90.03
scnpilot_expt_750_bf_scaffold_20516
Species: Cardinium endosymbiont of Bemisia tabaci (100%)
1 1473 bp 43.65 9.84 90.02
scnpilot_expt_750_bf_scaffold_374
Order: Sphingobacteriales (56.36%)
110 145101 bp 40.85 11.41 89.97
scnpilot_expt_750_bf_scaffold_473
Phylum: Bacteroidetes (69.35%)
124 129867 bp 38.92 9.18 89.97
scnpilot_expt_750_bf_scaffold_9458
Order: Bacteroidales (50%)
4 3017 bp 38.55 11.77 89.89
scnpilot_expt_750_bf_scaffold_65
Order: Sphingobacteriales (65.92%)
223 265134 bp 39.86 10.22 89.89
scnpilot_expt_750_bf_scaffold_1163
Order: Sphingobacteriales (92.31%)
13 11915 bp 38.32 9.40 89.74
scnpilot_expt_750_bf_scaffold_202
Order: Sphingobacteriales (60.24%)
254 339573 bp 40.16 10.28 89.65
scnpilot_expt_750_bf_scaffold_706
Order: Sphingobacteriales (59.62%)
52 57880 bp 41.50 10.09 89.64
scnpilot_expt_750_bf_scaffold_11278
Species: Flavobacterium johnsoniae (50%)
2 2227 bp 40.59 7.18 89.58
scnpilot_expt_750_bf_scaffold_764
Order: Cytophagales (50%)
30 32585 bp 38.96 10.76 89.56
scnpilot_expt_750_bf_scaffold_328
Order: Sphingobacteriales (54.55%)
121 153910 bp 39.67 10.72 89.49
scnpilot_expt_750_bf_scaffold_52
Order: Sphingobacteriales (67.76%)
214 286213 bp 40.40 11.00 89.17
scnpilot_expt_750_bf_scaffold_309
Phylum: Bacteroidetes (83.33%)
102 110797 bp 40.36 10.62 89.12
scnpilot_expt_750_bf_scaffold_595
Order: Sphingobacteriales (64.29%)
28 33297 bp 40.93 9.72 89.09
scnpilot_expt_750_bf_scaffold_1389
Order: Flavobacteriales (60.53%)
38 36861 bp 40.53 10.56 89.07
scnpilot_expt_750_bf_scaffold_586
Order: Sphingobacteriales (55.26%)
76 70509 bp 40.77 11.35 89.01
scnpilot_expt_750_bf_scaffold_2331
Order: Sphingobacteriales (100%)
5 6592 bp 41.16 8.72 88.97
scnpilot_expt_750_bf_scaffold_179
Order: Sphingobacteriales (61.83%)
131 142472 bp 39.89 10.30 88.94
scnpilot_expt_750_bf_scaffold_381
Order: Sphingobacteriales (65.48%)
84 94081 bp 39.40 8.39 88.91
Displaying items 1-50 of 114 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.