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SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK

Properties

Avg. coverage: 11.36 Longest contig: 223.48 Kbp Bin length: 5.14 Mbp GC content: 42.47 %
Contigs count: 122 Features count: 4418 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Displaying items 51-100 of 122 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_397
Order: Sphingobacteriales (75.61%)
41 44727 bp 42.59 11.37 85.73
scnpilot_solids1_trim150_scaffold_627
Order: Sphingobacteriales (60%)
25 29183 bp 42.32 11.36 89.16
scnpilot_solids1_trim150_scaffold_184
Order: Sphingobacteriales (54.17%)
96 118378 bp 42.71 11.35 88.90
scnpilot_solids1_trim150_scaffold_151
Order: Sphingobacteriales (56.45%)
62 72732 bp 43.05 11.32 91.55
scnpilot_solids1_trim150_scaffold_430
Order: Sphingobacteriales (77.78%)
30 36592 bp 41.38 11.31 91.30
scnpilot_solids1_trim150_scaffold_986
Order: Sphingobacteriales (60%)
20 17971 bp 42.97 11.28 86.64
scnpilot_solids1_trim150_scaffold_273
Order: Sphingobacteriales (81.03%)
59 62057 bp 41.35 11.28 90.79
scnpilot_solids1_trim150_scaffold_95
Order: Sphingobacteriales (54.9%)
103 101858 bp 42.17 11.27 86.64
scnpilot_solids1_trim150_scaffold_396
Order: Sphingobacteriales (80%)
30 38570 bp 41.87 11.25 87.05
scnpilot_solids1_trim150_scaffold_13798
Order: Sphingobacteriales (75%)
4 2293 bp 40.08 11.25 79.68
scnpilot_solids1_trim150_scaffold_489
Order: Sphingobacteriales (67.86%)
28 32299 bp 42.87 11.24 85.38
scnpilot_solids1_trim150_scaffold_31
Order: Sphingobacteriales (75.97%)
156 189856 bp 42.32 11.24 88.90
scnpilot_solids1_trim150_scaffold_57
Order: Sphingobacteriales (58.18%)
110 132793 bp 42.02 11.24 89.78
scnpilot_solids1_trim150_scaffold_135
Phylum: Bacteroidetes (70.77%)
65 79443 bp 42.92 11.23 88.15
scnpilot_solids1_trim150_scaffold_90
Order: Sphingobacteriales (61.6%)
127 161546 bp 42.73 11.21 91.08
scnpilot_solids1_trim150_scaffold_394
Order: Sphingobacteriales (71.43%)
38 38792 bp 42.03 11.21 86.55
scnpilot_solids1_trim150_scaffold_462
Phylum: Bacteroidetes (72.41%)
29 34209 bp 43.04 11.20 90.32
scnpilot_solids1_trim150_scaffold_150
Order: Sphingobacteriales (69.49%)
61 73662 bp 42.15 11.18 88.25
scnpilot_solids1_trim150_scaffold_175
Order: Sphingobacteriales (53.7%)
55 65186 bp 42.24 11.17 87.77
scnpilot_solids1_trim150_scaffold_511
Phylum: Bacteroidetes (78.43%)
52 53466 bp 42.23 11.15 88.87
scnpilot_solids1_trim150_scaffold_259
Phylum: Bacteroidetes (55.56%)
36 52555 bp 41.69 11.15 89.59
scnpilot_solids1_trim150_scaffold_578
Order: Sphingobacteriales (61.9%)
21 27761 bp 43.33 11.14 86.70
scnpilot_solids1_trim150_scaffold_225
Order: Sphingobacteriales (67.31%)
52 57878 bp 42.08 11.09 87.46
scnpilot_solids1_trim150_scaffold_92
Order: Sphingobacteriales (64.77%)
88 112542 bp 42.28 11.06 88.66
scnpilot_solids1_trim150_scaffold_1849
Species: Flavihumibacter solisilvae (50%)
6 10697 bp 42.47 11.06 96.78
scnpilot_solids1_trim150_scaffold_115
Order: Sphingobacteriales (70.79%)
94 89933 bp 41.38 11.04 87.78
scnpilot_solids1_trim150_scaffold_602
Order: Sphingobacteriales (69.57%)
23 26979 bp 41.46 11.00 87.85
scnpilot_solids1_trim150_scaffold_125
Order: Sphingobacteriales (78.46%)
66 85240 bp 42.27 10.98 90.37
scnpilot_solids1_trim150_scaffold_660
Order: Sphingobacteriales (59.38%)
33 40747 bp 45.44 10.98 91.49
scnpilot_solids1_trim150_scaffold_1180
Genus: Flavihumibacter (50%)
10 15283 bp 43.18 10.98 89.31
scnpilot_solids1_trim150_scaffold_315
Order: Sphingobacteriales (70.45%)
44 46028 bp 40.76 10.98 85.55
scnpilot_solids1_trim150_scaffold_1345
Species: Niastella koreensis (54.55%)
11 13902 bp 43.10 10.96 89.88
scnpilot_solids1_trim150_scaffold_3120
Species: Niastella koreensis (85.71%)
7 6963 bp 42.60 10.92 84.92
scnpilot_solids1_trim150_scaffold_733
Order: Sphingobacteriales (50%)
21 22951 bp 42.74 10.88 83.22
scnpilot_solids1_trim150_scaffold_138
Order: Sphingobacteriales (65.22%)
70 77722 bp 41.93 10.87 90.93
scnpilot_solids1_trim150_scaffold_2858
Order: Sphingobacteriales (54.55%)
11 7491 bp 41.17 10.87 86.82
scnpilot_solids1_trim150_scaffold_1312
Order: Sphingobacteriales (60%)
15 14113 bp 41.17 10.86 81.99
scnpilot_solids1_trim150_scaffold_401
Order: Sphingobacteriales (76.47%)
51 54804 bp 41.72 10.86 89.81
scnpilot_solids1_trim150_scaffold_218
Order: Sphingobacteriales (52.27%)
44 58509 bp 42.29 10.81 90.50
scnpilot_solids1_trim150_scaffold_919
Order: Sphingobacteriales (83.33%)
18 18909 bp 44.20 10.80 76.71
scnpilot_solids1_trim150_scaffold_588
Phylum: Bacteroidetes (71.88%)
33 27397 bp 39.96 10.76 89.15
scnpilot_solids1_trim150_scaffold_355
Order: Sphingobacteriales (57.89%)
39 42436 bp 39.98 10.72 85.19
scnpilot_solids1_trim150_scaffold_219
Order: Sphingobacteriales (61.29%)
62 64566 bp 43.08 10.67 89.20
scnpilot_solids1_trim150_scaffold_224
Phylum: Bacteroidetes (83.33%)
54 59946 bp 43.21 10.62 90.79
scnpilot_solids1_trim150_scaffold_563
Order: Sphingobacteriales (84%)
25 28309 bp 42.46 10.57 89.45
scnpilot_solids1_trim150_scaffold_206
Order: Sphingobacteriales (60.42%)
48 59709 bp 41.69 10.56 89.01
scnpilot_solids1_trim150_scaffold_554
Order: Sphingobacteriales (66.67%)
24 28805 bp 42.55 10.56 88.13
scnpilot_solids1_trim150_scaffold_13915
Species: Niastella koreensis (100%)
1 2279 bp 44.32 10.53 53.31
scnpilot_solids1_trim150_scaffold_89
Order: Sphingobacteriales (65.66%)
101 105192 bp 42.22 10.52 87.07
scnpilot_solids1_trim150_scaffold_10707
Genus: Sphingobacterium (60%)
5 2746 bp 40.93 10.49 90.35
Displaying items 51-100 of 122 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.