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SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK

Properties

Avg. coverage: 11.36 Longest contig: 223.48 Kbp Bin length: 5.14 Mbp GC content: 42.47 %
Contigs count: 122 Features count: 4418 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Displaying items 51-100 of 122 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_1002
Order: Sphingobacteriales (54.55%)
22 25128 bp 43.81 9.80 94.85
scnpilot_solids1_trim150_scaffold_559
Phylum: Bacteroidetes (54.55%)
22 28518 bp 44.33 12.20 90.98
scnpilot_solids1_trim150_scaffold_602
Order: Sphingobacteriales (69.57%)
23 26979 bp 41.46 11.00 87.85
scnpilot_solids1_trim150_scaffold_417
Phylum: Bacteroidetes (82.61%)
23 37343 bp 42.89 11.99 88.28
scnpilot_solids1_trim150_scaffold_440
Order: Sphingobacteriales (69.57%)
23 35946 bp 41.88 10.20 90.46
scnpilot_solids1_trim150_scaffold_716
Order: Sphingobacteriales (65.22%)
23 23479 bp 43.66 11.90 85.88
scnpilot_solids1_trim150_scaffold_729
Order: Sphingobacteriales (62.5%)
24 23052 bp 41.26 12.23 87.65
scnpilot_solids1_trim150_scaffold_507
Phylum: Bacteroidetes (77.27%)
24 31348 bp 42.71 12.21 81.14
scnpilot_solids1_trim150_scaffold_547
Order: Sphingobacteriales (75%)
24 29104 bp 42.31 10.13 93.02
scnpilot_solids1_trim150_scaffold_554
Order: Sphingobacteriales (66.67%)
24 28805 bp 42.55 10.56 88.13
scnpilot_solids1_trim150_scaffold_627
Order: Sphingobacteriales (60%)
25 29183 bp 42.32 11.36 89.16
scnpilot_solids1_trim150_scaffold_628
Phylum: Bacteroidetes (76%)
25 26027 bp 42.07 12.29 79.15
scnpilot_solids1_trim150_scaffold_563
Order: Sphingobacteriales (84%)
25 28309 bp 42.46 10.57 89.45
scnpilot_solids1_trim150_scaffold_455
Phylum: Bacteroidetes (80.77%)
27 34895 bp 42.07 11.96 91.13
scnpilot_solids1_trim150_scaffold_489
Order: Sphingobacteriales (67.86%)
28 32299 bp 42.87 11.24 85.38
scnpilot_solids1_trim150_scaffold_531
Order: Sphingobacteriales (51.85%)
28 30059 bp 43.62 10.42 85.02
scnpilot_solids1_trim150_scaffold_462
Phylum: Bacteroidetes (72.41%)
29 34209 bp 43.04 11.20 90.32
scnpilot_solids1_trim150_scaffold_396
Order: Sphingobacteriales (80%)
30 38570 bp 41.87 11.25 87.05
scnpilot_solids1_trim150_scaffold_430
Order: Sphingobacteriales (77.78%)
30 36592 bp 41.38 11.31 91.30
scnpilot_solids1_trim150_scaffold_466
Phylum: Bacteroidetes (73.33%)
30 34058 bp 44.79 11.65 86.52
scnpilot_solids1_trim150_scaffold_487
Order: Sphingobacteriales (65.63%)
32 32374 bp 41.99 12.01 89.50
scnpilot_solids1_trim150_scaffold_660
Order: Sphingobacteriales (59.38%)
33 40747 bp 45.44 10.98 91.49
scnpilot_solids1_trim150_scaffold_260
Order: Sphingobacteriales (51.52%)
33 55611 bp 42.65 11.95 92.13
scnpilot_solids1_trim150_scaffold_588
Phylum: Bacteroidetes (71.88%)
33 27397 bp 39.96 10.76 89.15
scnpilot_solids1_trim150_scaffold_391
Phylum: Bacteroidetes (71.43%)
35 38984 bp 40.34 12.81 87.49
scnpilot_solids1_trim150_scaffold_408
Order: Sphingobacteriales (72.22%)
36 38038 bp 43.27 11.54 88.37
scnpilot_solids1_trim150_scaffold_259
Phylum: Bacteroidetes (55.56%)
36 52555 bp 41.69 11.15 89.59
scnpilot_solids1_trim150_scaffold_429
Phylum: Bacteroidetes (59.46%)
37 36639 bp 41.68 11.52 87.73
scnpilot_solids1_trim150_scaffold_299
Order: Sphingobacteriales (54.05%)
37 47896 bp 42.72 12.09 90.98
scnpilot_solids1_trim150_scaffold_394
Order: Sphingobacteriales (71.43%)
38 38792 bp 42.03 11.21 86.55
scnpilot_solids1_trim150_scaffold_355
Order: Sphingobacteriales (57.89%)
39 42436 bp 39.98 10.72 85.19
scnpilot_solids1_trim150_scaffold_291
Phylum: Bacteroidetes (55%)
40 48921 bp 43.95 12.40 87.26
scnpilot_solids1_trim150_scaffold_390
Order: Sphingobacteriales (56.1%)
41 39184 bp 42.98 11.49 84.42
scnpilot_solids1_trim150_scaffold_397
Order: Sphingobacteriales (75.61%)
41 44727 bp 42.59 11.37 85.73
scnpilot_solids1_trim150_scaffold_395
Order: Sphingobacteriales (59.52%)
42 44027 bp 42.27 9.85 83.66
scnpilot_solids1_trim150_scaffold_278
Phylum: Bacteroidetes (79.07%)
43 50348 bp 42.53 11.82 86.50
scnpilot_solids1_trim150_scaffold_218
Order: Sphingobacteriales (52.27%)
44 58509 bp 42.29 10.81 90.50
scnpilot_solids1_trim150_scaffold_315
Order: Sphingobacteriales (70.45%)
44 46028 bp 40.76 10.98 85.55
scnpilot_solids1_trim150_scaffold_204
Phylum: Bacteroidetes (80.85%)
47 60240 bp 41.98 12.06 90.05
scnpilot_solids1_trim150_scaffold_206
Order: Sphingobacteriales (60.42%)
48 59709 bp 41.69 10.56 89.01
scnpilot_solids1_trim150_scaffold_172
Order: Sphingobacteriales (68%)
50 66225 bp 43.11 11.98 88.87
scnpilot_solids1_trim150_scaffold_401
Order: Sphingobacteriales (76.47%)
51 54804 bp 41.72 10.86 89.81
scnpilot_solids1_trim150_scaffold_194
Phylum: Bacteroidetes (69.23%)
52 61776 bp 43.05 12.16 88.07
scnpilot_solids1_trim150_scaffold_225
Order: Sphingobacteriales (67.31%)
52 57878 bp 42.08 11.09 87.46
scnpilot_solids1_trim150_scaffold_511
Phylum: Bacteroidetes (78.43%)
52 53466 bp 42.23 11.15 88.87
scnpilot_solids1_trim150_scaffold_224
Phylum: Bacteroidetes (83.33%)
54 59946 bp 43.21 10.62 90.79
scnpilot_solids1_trim150_scaffold_226
Phylum: Bacteroidetes (68.52%)
54 57836 bp 39.92 11.95 80.71
scnpilot_solids1_trim150_scaffold_171
Phylum: Bacteroidetes (92.73%)
55 66308 bp 43.19 12.27 85.94
scnpilot_solids1_trim150_scaffold_175
Order: Sphingobacteriales (53.7%)
55 65186 bp 42.24 11.17 87.77
scnpilot_solids1_trim150_scaffold_199
Order: Sphingobacteriales (60.34%)
59 84100 bp 42.98 11.84 87.12
Displaying items 51-100 of 122 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.