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berkeley_reactor_200306_biofilm_scaffold_2007

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_2007_1
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1434)
DNA (1434bp) protein (478aa)
ATP-dependent helicase HrpB n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTY1_9RHIZ
ATP-dependent helicase {ECO:0000313|EMBL:KFG67385.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ATP-dependent helicase HrpB
berkeley_reactor_200306_biofilm_scaffold_2007_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1685..2323
DNA (639bp) protein (213aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A911_STAND
cobyrinic acid ac-diamide synthase
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ADH88716.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_2007_3
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2350..3675
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IM43_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL56387.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_2007_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3786..4934)
DNA (1149bp) protein (383aa)
Aminotransferase class I and II n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0ULM7_METS4
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ45478.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_2007_5
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5061..7103
DNA (2043bp) protein (681aa)
Putative membrane protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KND5_MESAW
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGB46175.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
berkeley_reactor_200306_biofilm_scaffold_2007_6
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7072..7767)
DNA (696bp) protein (232aa)
Transcriptional regulator, AraC family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IF71_METNO
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACL55782.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_2007_7
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7832..9004
DNA (1173bp) protein (391aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IF72_METNO
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACL55783.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_2007_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9100..9678
DNA (579bp) protein (193aa)
ATP-dependent protease subunit HslV {ECO:0000255|HAMAP-Rule:MF_00248}; EC=3.4.25.2 {ECO:0000255|HAMAP-Rule:MF_00248};; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
ATP-dependent protease subunit HslV n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=HSLV_RHOPA
hslV; ATP-dependent protease peptidase subunit
berkeley_reactor_200306_biofilm_scaffold_2007_9
bacterium YEK0313, Bacteria

Not on your lists

9780..11081
DNA (1302bp) protein (434aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Rhodovulum sp. PH10 RepID=J6UH37_9RHOB
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hslU; ATP-dependent protease ATP-binding subunit HslU
berkeley_reactor_200306_biofilm_scaffold_2007_10
bacterium YEK0313, Bacteria

Not on your lists

11173..11757
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5K0U2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ11913.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
cupin domain protein
berkeley_reactor_200306_biofilm_scaffold_2007_11
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11895..12176)
DNA (282bp) protein (94aa)
Translation initiation factor IF-1 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPG5_9RHIZ
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
infA; translation initiation factor IF-1
berkeley_reactor_200306_biofilm_scaffold_2007_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12217..13461)
DNA (1245bp) protein (415aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW11_PARL1
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABS64094.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
berkeley_reactor_200306_biofilm_scaffold_2007_13
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14028..15215
DNA (1188bp) protein (396aa)
PREDICTED: serine--glyoxylate aminotransferase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1170A
Serine-glyoxylate aminotransferase {ECO:0000313|EMBL:KEC78847.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
sgaA; serine-glyoxylate aminotransferase-related
berkeley_reactor_200306_biofilm_scaffold_2007_14
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15262..16212
DNA (951bp) protein (317aa)
citryl-CoA lyase (EC:4.1.3.34)
Probable beta subunit of citrate lyase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FR82_9RHOB
Probable beta subunit of citrate lyase {ECO:0000313|EMBL:EDM71300.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
berkeley_reactor_200306_biofilm_scaffold_2007_15
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16237..17412
DNA (1176bp) protein (392aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
malate--CoA ligase subunit beta n=1 Tax=Paracoccus sp. N5 RepID=UPI0003732A7B
malate--CoA ligase, beta subunit
berkeley_reactor_200306_biofilm_scaffold_2007_16
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17416..18327
DNA (912bp) protein (304aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SQ49_9RHOB
berkeley_reactor_200306_biofilm_scaffold_2007_17
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18453..18677
DNA (225bp) protein (75aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWF4_NITHN
CopG domain-containing protein DNA-binding domain-containing protein
CopG family transcriptional regulator {ECO:0000313|EMBL:KGE50221.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. vasculorum.;"
berkeley_reactor_200306_biofilm_scaffold_2007_18
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18661..18933
DNA (273bp) protein (91aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWF5_NITHN
RelE/StbE family addiction module toxin
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:ADE15612.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
berkeley_reactor_200306_biofilm_scaffold_2007_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18948..19850)
DNA (903bp) protein (301aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000379813D
Outer membrane protein/peptidoglycan-associated (Lipo)protein {ECO:0000313|EMBL:EJC70958.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
OmpA/MotB family outer membrane protein
berkeley_reactor_200306_biofilm_scaffold_2007_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19858..22224)
DNA (2367bp) protein (789aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PJH2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42752.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
Displaying 20 items

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