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berkeley_reactor_200306_biofilm_scaffold_65599

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_65599_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1071
DNA (1071bp) protein (357aa)
ppdK; Pyruvate phosphate dikinase (Pyruvate, orthophosphate dikinase) (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ43_9RHIZ
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EIM26085.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
berkeley_reactor_200306_biofilm_scaffold_65599_2
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1195..1587
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDM6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV14446.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Toxin-antitoxin system, toxin component, RelE family
berkeley_reactor_200306_biofilm_scaffold_65599_3
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1584..1895
DNA (312bp) protein (104aa)
Transcriptional regulator, XRE family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDK6_9RHIZ
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CCV14445.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
XRE family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_65599_4
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2066..3421)
DNA (1356bp) protein (452aa)
Divalent metal cation transporter MntH n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LNR1_RHITR
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Mn2+/Fe2+ transporter, NRAMP family
berkeley_reactor_200306_biofilm_scaffold_65599_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3524..4135
DNA (612bp) protein (204aa)
Manganese transporter n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FLG5_9RHIZ
Manganese transporter {ECO:0000313|EMBL:ESW81465.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
DtxR family iron (metal) dependent repressor
berkeley_reactor_200306_biofilm_scaffold_65599_6
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4148..4627)
DNA (480bp) protein (160aa)
UPI0003CECE47 related cluster n=1 Tax=unknown RepID=UPI0003CECE47
AsnC family transcriptional regulator {ECO:0000313|EMBL:ESW83670.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
AsnC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_65599_7
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4771..5784
DNA (1014bp) protein (338aa)
1-aminocyclopropane-1-carboxylate deaminase {ECO:0000255|HAMAP-Rule:MF_00807}; Short=ACC deaminase {ECO:0000255|HAMAP-Rule:MF_00807};; Short=ACCD {ECO:0000255|HAMAP-Rule:MF_00807};; EC=3.5.99.7 {ECO:0000255|HAMAP-Rule:MF_00807};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
1-aminocyclopropane-1-carboxylate deaminase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=1A1D_METS4
1-aminocyclopropane-1-carboxylate deaminase
berkeley_reactor_200306_biofilm_scaffold_65599_8
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5833..7344
DNA (1512bp) protein (504aa)
exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IEN0_METNO
berkeley_reactor_200306_biofilm_scaffold_65599_9
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7402..7623
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IHP5_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB94566.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_65599_10
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7695..9005)
DNA (1311bp) protein (437aa)
manganese transporter n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000379051E
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
Mn2+/Fe2+ transporter
berkeley_reactor_200306_biofilm_scaffold_65599_11
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9219..10238)
DNA (1020bp) protein (340aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
lpxK; Tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YV23_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_65599_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10238..11536)
DNA (1299bp) protein (433aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003159123
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:EJW11182.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
berkeley_reactor_200306_biofilm_scaffold_65599_13
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11595..12299)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D4H0_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL07059.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
berkeley_reactor_200306_biofilm_scaffold_65599_14
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12304..12552)
DNA (249bp) protein (83aa)
inositol monophosphatase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00038089A3
Uncharacterized protein {ECO:0000313|EMBL:CDX24191.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_65599_15
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12694..13503)
DNA (810bp) protein (270aa)
Inositol monophosphatase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IFE0_XANP2
inositol monophosphatase
Inositol monophosphatase {ECO:0000313|EMBL:ABS66733.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_65599_16
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13897..14472
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003638BAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ05980.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
berkeley_reactor_200306_biofilm_scaffold_65599_17
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14479..15405)
DNA (927bp) protein (309aa)
4-hydroxybenzoate polyprenyltransferase n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035DAAD3
4-hydroxybenzoate polyprenyl transferase {ECO:0000313|EMBL:EEE43528.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
ubiA; 4-hydroxybenzoate-octaprenyl transferase UbiA
berkeley_reactor_200306_biofilm_scaffold_65599_18
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15408..15866)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI000375545F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF88375.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_65599_19
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15929..16702
DNA (774bp) protein (258aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000382A6AF
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_65599_20
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16967..17857)
DNA (891bp) protein (297aa)
Transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HR98_AZOC5
lysR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAF87147.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_65599_21
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17957..18919)
DNA (963bp) protein (321aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Thioredoxin reductase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPM9_9RHIZ
thioredoxin reductase
berkeley_reactor_200306_biofilm_scaffold_65599_22
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18939..19880)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031521BD
hypothetical protein
Putative nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EIM25922.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
berkeley_reactor_200306_biofilm_scaffold_65599_23
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20201..20572
DNA (372bp) protein (124aa)
rplA2; protein RplA (EC:4.2.1.42)
RplA {ECO:0000313|EMBL:AEV60948.1}; EC=4.2.1.42 {ECO:0000313|EMBL:AEV60948.1};; TaxID=1114970 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens F113.;"
RplA n=2 Tax=Pseudomonas RepID=G8Q9A9_PSEFL
berkeley_reactor_200306_biofilm_scaffold_65599_24
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20900..21265
DNA (366bp) protein (122aa)
Rare lipoprotein A n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HXQ9_PSEUO
RplA family lipoprotein {ECO:0000313|EMBL:ETM65786.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
rare lipoprotein A
berkeley_reactor_200306_biofilm_scaffold_65599_25
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21286..22767
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F0C92A
glutamate--cysteine ligase
Glutamate-cysteine ligase {ECO:0000313|EMBL:BAF88965.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_65599_26
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22856..23809
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000367F117
Transporter {ECO:0000313|EMBL:KFG67314.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_65599_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23909..24169
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVW7_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD07643.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
berkeley_reactor_200306_biofilm_scaffold_65599_28
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24335..26149)
DNA (1815bp) protein (605aa)
Putative methyl-accepting chemotaxis receptor/sensory transducer n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T671_9BRAD
Putative methyl-accepting chemotaxis receptor/sensory transducer {ECO:0000313|EMBL:CCE01948.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
methyl-accepting chemotaxis sensory transducer
Displaying 28 items

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