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berkeley_reactor_200306_biofilm_scaffold_154490

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_154490_1
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..788
DNA (786bp) protein (262aa)
Sel1 repeat protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GW29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWY35838.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
sodium-type flagellar motor component
berkeley_reactor_200306_biofilm_scaffold_154490_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(831..2333)
DNA (1503bp) protein (501aa)
Peptidase S10 serine carboxypeptidase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B3F3_RHILS
peptidase S10 serine carboxypeptidase
Peptidase S10 serine carboxypeptidase {ECO:0000313|EMBL:ACS58855.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_154490_3
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2459..2938)
DNA (480bp) protein (160aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11IB1_MESSB
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ABG62864.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
berkeley_reactor_200306_biofilm_scaffold_154490_4
unknown

Not on your lists

3030..3194
DNA (165bp) protein (55aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_154490_5
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3226..4287
DNA (1062bp) protein (354aa)
UPI0003CE1715 related cluster n=1 Tax=unknown RepID=UPI0003CE1715
Membrane dipeptidase {ECO:0000313|EMBL:CDX23411.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
Zn-dependent dipeptidase, microsomal dipeptidase
berkeley_reactor_200306_biofilm_scaffold_154490_6
unknown

Not on your lists

4381..4728
DNA (348bp) protein (116aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_154490_7
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4750..5019)
DNA (270bp) protein (90aa)
Homospermidine synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H9J9_9BRAD
Homospermidine synthase {ECO:0000313|EMBL:ERF86517.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
berkeley_reactor_200306_biofilm_scaffold_154490_8
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5262..5552
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9L1_AZOL4
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ47333.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_154490_9
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5555..5842
DNA (288bp) protein (96aa)
Transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MI28_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX24534.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
conserved protein of unknown function; putative HTH domain
berkeley_reactor_200306_biofilm_scaffold_154490_10
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5874..6587)
DNA (714bp) protein (238aa)
Putative transcriptional regulator n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QEP5_9BRAD
Putative transcriptional regulator {ECO:0000313|EMBL:EIG58251.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
ArsR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_154490_11
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6662..7624)
DNA (963bp) protein (321aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5J9_STAND
oligopeptide/dipeptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADH88123.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_154490_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7621..8610)
DNA (990bp) protein (330aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5K0_STAND
oligopeptide/dipeptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADH88124.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_154490_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8737..9642)
DNA (906bp) protein (302aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5K1_STAND
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADH88125.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_154490_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9632..10645)
DNA (1014bp) protein (338aa)
peptide ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI00036F8A2E
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADH88126.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_154490_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10832..12424)
DNA (1593bp) protein (531aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036D9E6F
family 5 extracellular solute-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ADH88127.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_154490_16
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12671..13000)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EQB2_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK52125.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_154490_17
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13133..14074)
DNA (942bp) protein (314aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
glutathione synthetase (EC:6.3.2.3)
glutathione synthetase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E3CA27
berkeley_reactor_200306_biofilm_scaffold_154490_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14180..15379)
DNA (1200bp) protein (400aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZB8_9RHIZ
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:EIM29310.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Bcr/CflA subfamily drug resistance transporter
berkeley_reactor_200306_biofilm_scaffold_154490_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15462..16745)
DNA (1284bp) protein (428aa)
Putative exported serine protease inhibitor n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGY5_9BRAD
Putative exported serine protease inhibitor {ECO:0000313|EMBL:EGP09591.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative exported serine protease inhibitor
berkeley_reactor_200306_biofilm_scaffold_154490_20
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16889..17761)
DNA (873bp) protein (291aa)
UPI0003CDDA18 related cluster n=1 Tax=unknown RepID=UPI0003CDDA18
LysR family transcriptional regulator {ECO:0000313|EMBL:ESY67012.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_154490_21
unknown

Not on your lists

17875..18093
DNA (219bp) protein (73aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_154490_22
bacterium YEK0313, Bacteria

Not on your lists

18230..18823
DNA (594bp) protein (198aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hisB; imidazoleglycerol-phosphate dehydratase HisB (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=2 Tax=Oligotropha carboxidovorans RepID=HIS7_OLICO
berkeley_reactor_200306_biofilm_scaffold_154490_23
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18825..19310
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RIX9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR26041.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_154490_24
bacterium YEK0313, Bacteria

Not on your lists

19307..19957
DNA (651bp) protein (217aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CKJ3_9RHIZ
hisH; imidazole glycerol phosphate synthase subunit HisH
berkeley_reactor_200306_biofilm_scaffold_154490_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19954..20700
DNA (747bp) protein (249aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZAD4_METPB
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
berkeley_reactor_200306_biofilm_scaffold_154490_26
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20697..21563
DNA (867bp) protein (289aa)
Arginase/agmatinase/formiminoglutamase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y2Y8_MESOW
Arginase {ECO:0000313|EMBL:EZQ14442.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Arginase/agmatinase/formiminoglutamase
berkeley_reactor_200306_biofilm_scaffold_154490_27
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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21652..22434
DNA (783bp) protein (261aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYD9_POLGS
hisF; imidazole glycerol phosphate synthase subunit HisF
berkeley_reactor_200306_biofilm_scaffold_154490_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22431..22751
DNA (321bp) protein (107aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FQM9_9RHOB
hisE; phosphoribosyl-ATP pyrophosphatase
berkeley_reactor_200306_biofilm_scaffold_154490_29
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22795..23748
DNA (954bp) protein (318aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
pantothenate kinase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D69FAC
pantothenate kinase
berkeley_reactor_200306_biofilm_scaffold_154490_30
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23784..24530
DNA (747bp) protein (249aa)
PA-phosphatase related phosphoesterase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IQ57_AZOC5
PA-phosphatase-like phosphoesterase
PA-phosphatase related phosphoesterase {ECO:0000313|EMBL:BAF86744.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Displaying items 1-30 of 110 in total

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