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berkeley_reactor_200306_biofilm_scaffold_135355

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_135355_1
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1295)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI000366E20E
pyridine nucleotide-disulfide oxidoreductase
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AIB16003.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
berkeley_reactor_200306_biofilm_scaffold_135355_2
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1295..1696)
DNA (402bp) protein (134aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Burkholderia sp. BT03 RepID=J2Q9A9_9BURK
Endoribonuclease L-PSP {ECO:0000313|EMBL:EUC18553.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
endoribonuclease L-PSP superfamily
berkeley_reactor_200306_biofilm_scaffold_135355_3
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1718..2560)
DNA (843bp) protein (281aa)
Putative taurine ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EEU8_BRASB
taurine ABC transporter permease
Putative taurine ABC transporter, permease protein {ECO:0000313|EMBL:ABQ34692.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
berkeley_reactor_200306_biofilm_scaffold_135355_4
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2557..3351)
DNA (795bp) protein (265aa)
Taurine import ATP-binding protein TauB {ECO:0000256|HAMAP-Rule:MF_01714}; EC=3.6.3.36 {ECO:0000256|HAMAP-Rule:MF_01714};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Putative Taurine ABC transporter, ATP-binding protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EEU9_BRASB
taurine ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_135355_5
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3405..4397)
DNA (993bp) protein (331aa)
Putative Taurine ABC transporter, substrate binding protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EEV0_BRASB
taurine ABC transporter substrate binding protein
Putative Taurine ABC transporter, substrate binding protein {ECO:0000313|EMBL:ABQ34694.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
berkeley_reactor_200306_biofilm_scaffold_135355_6
unknown

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4530..5438
DNA (909bp) protein (303aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_135355_7
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5413..6816)
DNA (1404bp) protein (468aa)
Magnesium transporter n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LN77_9RHIZ
mgtE; Magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
berkeley_reactor_200306_biofilm_scaffold_135355_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7179..8993
DNA (1815bp) protein (605aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035F45C0
ABC transporter {ECO:0000313|EMBL:ETR78369.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
lipid A ABC exporter family, fused ATPase and inner membrane subunits
berkeley_reactor_200306_biofilm_scaffold_135355_9
Kluyveromyces marxianus, Kluyveromyces, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

9038..9823
DNA (786bp) protein (262aa)
peptidase C14 caspase catalytic subunit p20 n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003635319
Verprolin {ECO:0000313|EMBL:BAO40857.1}; TaxID=1003335 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces.;" source="Kluyveromyces marxianus DMKU3-1042.;"
berkeley_reactor_200306_biofilm_scaffold_135355_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10388..12316)
DNA (1929bp) protein (643aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HC53_9BRAD
berkeley_reactor_200306_biofilm_scaffold_135355_11
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12421..13491)
DNA (1071bp) protein (357aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJW9_XANP2
tRNA(Ile)-lysidine synthetase
berkeley_reactor_200306_biofilm_scaffold_135355_12
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13496..14524)
DNA (1029bp) protein (343aa)
Tol-pal system protein YbgF n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UGN0_METS4
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ44755.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
tol-pal system protein YbgF
berkeley_reactor_200306_biofilm_scaffold_135355_13
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14635..15075
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030E58AE
tol-pal system-associated acyl-CoA thioesterase
FcbC protein {ECO:0000313|EMBL:BAQ44054.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
berkeley_reactor_200306_biofilm_scaffold_135355_14
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15562..16287
DNA (726bp) protein (242aa)
Protein TolQ n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GXZ3_9BRAD
Protein TolQ {ECO:0000313|EMBL:ERF82367.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
MotA/TolQ/ExbB proton channel
berkeley_reactor_200306_biofilm_scaffold_135355_15
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16300..16746
DNA (447bp) protein (149aa)
Biopolymer transport protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IMB3_AZOC5
tolR; biopolymer transporter
Biopolymer transport protein {ECO:0000313|EMBL:BAF86520.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_135355_16
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16753..17961
DNA (1209bp) protein (403aa)
TolA protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ICN9_BEII9
TolA protein
TolA protein {ECO:0000313|EMBL:ACB93926.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_135355_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17961..18398
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HV02_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63735.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
berkeley_reactor_200306_biofilm_scaffold_135355_18
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18436..19761
DNA (1326bp) protein (442aa)
Protein TolB n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IMB7_AZOC5
twin-arginine translocation pathway signal
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_135355_19
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19819..21027
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D3D33B
Lytic transglycosylase {ECO:0000313|EMBL:KAI94991.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
lytic murein transglycosylase
berkeley_reactor_200306_biofilm_scaffold_135355_20
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21044..21457)
DNA (414bp) protein (138aa)
PilT protein domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RWA2_ACCPU
PilT protein domain protein {ECO:0000313|EMBL:CDH43164.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
PilT protein domain protein
berkeley_reactor_200306_biofilm_scaffold_135355_21
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21460..21729)
DNA (270bp) protein (90aa)
SpoVT/AbrB domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RWA1_ACCPU
Antitoxin VapB1 {ECO:0000313|EMBL:EXI90285.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
SpoVT/AbrB domain protein
berkeley_reactor_200306_biofilm_scaffold_135355_22
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21822..22808)
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FB7645
Putative Na+-dependent transporter {ECO:0000313|EMBL:EIM29460.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Na+/bile acid cotransporter protein
berkeley_reactor_200306_biofilm_scaffold_135355_23
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22992..24110)
DNA (1119bp) protein (373aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
ABC transporter n=1 Tax=Sinorhizobium medicae RepID=UPI00037A2688
sulfate ABC transporter ATPase
berkeley_reactor_200306_biofilm_scaffold_135355_24
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24122..25009)
DNA (888bp) protein (296aa)
UPI0003CF85C3 related cluster n=1 Tax=unknown RepID=UPI0003CF85C3
Sulfate/thiosulfate transporter permease subunit {ECO:0000313|EMBL:ESW68947.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
sulfate ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_135355_25
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25002..25883)
DNA (882bp) protein (294aa)
Sulfate transport system permease protein CysT n=1 Tax=Rhodovulum sp. PH10 RepID=J6JEI0_9RHOB
Sulfate transport system permease protein CysT {ECO:0000313|EMBL:EJW13305.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
sulfate ABC transporter, inner membrane subunit CysT
berkeley_reactor_200306_biofilm_scaffold_135355_26
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26053..27090)
DNA (1038bp) protein (346aa)
sulfate transporter subunit n=1 Tax=Methyloferula stellata RepID=UPI00037879AE
sulfate ABC transporter substrate-binding protein
Sulfate ABC transporter, periplasmic sulfate-binding protein {ECO:0000313|EMBL:ACB95204.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_135355_27
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27426..28451)
DNA (1026bp) protein (342aa)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055979};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036C8252
sulfate-binding protein
berkeley_reactor_200306_biofilm_scaffold_135355_28
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28541..28999)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000372828E
Uncharacterized protein {ECO:0000313|EMBL:KCZ56756.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
Rrf2 family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_135355_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29290..29808
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000360303A
peptidoglycan-associated lipoprotein
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:ADU42916.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
Displaying 29 items

View Taxonomy