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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 51-100 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4646 CNBR_UNK_99
Phylum: Proteobacteria (50%)
18 12670 bp 61.79 17.06 86.40
cn_combo_scaffold_3335 CNBR_UNK_378
Species: R_Alphaproteobacteria_66_14 (83.33%)
18 17216 bp 65.99 14.95 91.75
cn_combo_scaffold_7010 CNBR_UNK_384
Phylum: Proteobacteria (100%)
18 16288 bp 65.35 11.81 90.12
cn_combo_scaffold_4101 CNBR_UNK_402
Species: R_Alphaproteobacteria_66_14 (72.22%)
18 14287 bp 64.14 75.53 95.96
cn_combo_scaffold_4737 CNBR_UNK_431
Species: R_Alphaproteobacteria_66_14 (83.33%)
18 12400 bp 65.42 14.12 91.33
cn_combo_scaffold_4849 CNBR_UNK_376
Class: Gammaproteobacteria (50%)
18 17265 bp 67.17 53.09 90.53
cn_combo_scaffold_4920 CNBR_UNK_444
Order: Sphingomonadales (55.56%)
18 11934 bp 63.31 38.01 75.89
cn_combo_scaffold_2918 CNBR_UNK_364
Class: Betaproteobacteria (58.82%)
17 19371 bp 72.47 130.50 94.81
cn_combo_scaffold_4798 CNBR_UNK_72
Species: Rhodanobacter sp. 115 (52.94%)
17 12282 bp 62.64 15.14 72.89
cn_combo_scaffold_3454 CNBR_UNK_380
Class: Gammaproteobacteria (64.71%)
17 16651 bp 60.61 42.99 98.99
cn_combo_scaffold_3477 CNBR_UNK_382
Order: Rhizobiales (64.71%)
17 16530 bp 59.98 37.17 87.15
cn_combo_scaffold_4140 CNBR_UNK_405
Phylum: Proteobacteria (64.71%)
17 14127 bp 58.94 9.63 92.72
cn_combo_scaffold_4033 CNBR_UNK_17
Class: Gammaproteobacteria (52.94%)
17 16340 bp 65.35 86.64 88.44
cn_combo_scaffold_8922 CNBR_UNK_108
Phylum: Proteobacteria (58.82%)
17 11195 bp 59.33 1116.15 84.79
cn_combo_scaffold_4202 CNBR_UNK_347b
Class: Gammaproteobacteria (52.94%)
17 22969 bp 63.55 59.98 97.62
cn_combo_scaffold_5967 CNBR_UNK_113 17 10045 bp 56.44 12.58 72.57
cn_combo_scaffold_4590 CNBR_UNK_386
Class: Betaproteobacteria (64.71%)
17 16024 bp 57.82 333.06 90.26
cn_combo_scaffold_4029 CNBR_UNK_275
Class: Betaproteobacteria (52.94%)
17 14481 bp 67.02 15.31 94.37
cn_combo_scaffold_3508 CNBR_UNK_89 17 17321 bp 50.68 21.38 86.53
cn_combo_scaffold_2221 CNBR_UNK_343b
Class: Gammaproteobacteria (52.94%)
17 24665 bp 62.94 56.64 90.74
cn_combo_scaffold_3765 CNBR_UNK_93
Domain: Bacteria (50%)
16 15358 bp 63.71 35.05 85.56
cn_combo_scaffold_5318 CNBR_UNK_280
Order: Burkholderiales (50%)
16 11126 bp 59.88 16.30 90.63
cn_combo_scaffold_3028 CNBR_UNK_366
Phylum: Proteobacteria (56.25%)
16 18722 bp 63.39 140.71 76.75
cn_combo_scaffold_3162 CNBR_UNK_373
Order: Burkholderiales (75%)
16 18042 bp 61.22 22.49 92.07
cn_combo_scaffold_3325 CNBR_UNK_377
Species: Comamonadaceae bacterium A1 (56.25%)
16 17249 bp 61.85 23.05 76.60
cn_combo_scaffold_8438 CNBR_UNK_147 16 7402 bp 66.67 30.87 97.60
cn_combo_scaffold_3459 CNBR_UNK_381
Species: R_Alphaproteobacteria_66_14 (75%)
16 16623 bp 66.54 15.29 94.32
cn_combo_scaffold_3567 CNBR_UNK_357b
Phylum: Proteobacteria (68.75%)
16 20976 bp 61.13 12.55 89.06
cn_combo_scaffold_3589 CNBR_UNK_387
Order: Rhodobacterales (56.25%)
16 16018 bp 62.59 65.64 71.41
cn_combo_scaffold_3670 CNBR_UNK_389
Species: Rhodobacter sp. CACIA14H1 (75%)
16 15701 bp 64.24 11.38 90.89
cn_combo_scaffold_3762 CNBR_UNK_375
Class: Gammaproteobacteria (50%)
16 17346 bp 65.20 49.45 87.69
cn_combo_scaffold_4106 CNBR_UNK_403
Order: Rhizobiales (62.5%)
16 14269 bp 67.43 11.52 95.58
cn_combo_scaffold_4343 CNBR_UNK_409
Species: R_Alphaproteobacteria_66_14 (87.5%)
16 13474 bp 65.70 14.82 96.63
cn_combo_scaffold_4372 CNBR_UNK_410
Phylum: Proteobacteria (56.25%)
16 13383 bp 64.06 12.81 86.24
cn_combo_scaffold_4374 CNBR_UNK_411
Genus: Thiomonas (50%)
16 13382 bp 66.48 23.77 91.11
cn_combo_scaffold_4419 CNBR_UNK_415
Order: Burkholderiales (50%)
16 13270 bp 64.62 197.22 80.50
cn_combo_scaffold_8731 CNBR_UNK_274
Order: Burkholderiales (56.25%)
16 14845 bp 65.06 11.08 91.91
cn_combo_scaffold_4756 CNBR_UNK_433
Class: Alphaproteobacteria (50%)
16 12366 bp 62.17 17.35 97.84
cn_combo_scaffold_4788 CNBR_UNK_438
Species: R_Alphaproteobacteria_66_14 (75%)
16 12298 bp 64.93 15.20 93.45
cn_combo_scaffold_4790 CNBR_UNK_439
Class: Alphaproteobacteria (50%)
16 12297 bp 65.55 14.09 90.97
cn_combo_scaffold_3069 CNBR_UNK_4
Genus: Acidovorax (68.75%)
16 18519 bp 63.90 62.67 92.62
cn_combo_scaffold_8136 CNBR_UNK_502
Phylum: Proteobacteria (81.25%)
16 9259 bp 63.78 211.19 93.64
cn_combo_scaffold_7583 CNBR_UNK_125 16 8537 bp 59.25 10.12 87.33
cn_combo_scaffold_7683 CNBR_UNK_103
Domain: Bacteria (50%)
16 11768 bp 64.97 12.02 95.32
cn_combo_scaffold_6223 CNBR_UNK_487
Species: Mesorhizobium sp. L2C067A000 (60%)
15 9682 bp 60.23 11.19 92.37
cn_combo_scaffold_9251 CNBR_UNK_522
Order: Hydrogenophilales (53.33%)
15 8629 bp 58.20 30.92 87.33
cn_combo_scaffold_6427 CNBR_UNK_427
Order: Hydrogenophilales (86.67%)
15 12490 bp 61.09 340.38 93.87
cn_combo_scaffold_3155 CNBR_UNK_372
Order: Sphingomonadales (53.33%)
15 18085 bp 60.97 54.62 91.43
cn_combo_scaffold_3484 CNBR_UNK_383
Phylum: Proteobacteria (73.33%)
15 16491 bp 64.62 24.21 95.74
cn_combo_scaffold_3536 CNBR_UNK_385
Species: R_Alphaproteobacteria_66_14 (53.33%)
15 16243 bp 67.35 15.29 93.78
Displaying items 51-100 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.