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SCNpilot_expt_1000_bf_scaffold_3015_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3015_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..543)
DNA (543bp) protein (181aa)
spermidine synthase n=1 Tax=Afipia birgiae RepID=UPI0002E111D3
Uncharacterized protein {ECO:0000313|EMBL:EKS39605.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1657..2328)
DNA (672bp) protein (224aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMJ9_9BRAD
SCNpilot_expt_1000_bf_scaffold_3015_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2355..3242)
DNA (888bp) protein (296aa)
TIGR00255 family protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PP94_9BRAD
TIGR00255 family protein {ECO:0000313|EMBL:EKS40173.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3379..4719)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDF9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39601.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
aminodeoxychorismate lyase; K07082 UPF0755 protein
SCNpilot_expt_1000_bf_scaffold_3015_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4956..6221)
DNA (1266bp) protein (422aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ88_9BRAD
SCNpilot_expt_1000_bf_scaffold_3015_curated_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6328..6567)
DNA (240bp) protein (80aa)
Acyl carrier protein n=8 Tax=Bradyrhizobiaceae RepID=ACP_NITWN
acpP; acyl carrier protein; K02078 acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_expt_1000_bf_scaffold_3015_curated_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6867..7604)
DNA (738bp) protein (246aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PNR1_9BRAD
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EKS42454.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_3015_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7847..8800)
DNA (954bp) protein (318aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
malonyl CoA-ACP transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
ACP S-malonyltransferase n=1 Tax=Afipia birgiae RepID=UPI0002D41BBA
SCNpilot_expt_1000_bf_scaffold_3015_curated_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8949..9143
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PSD6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42450.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_3015_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9244..10524
DNA (1281bp) protein (427aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LE3_RHOP5
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABJ07241.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_3015_curated_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10808..11251
DNA (444bp) protein (148aa)
30S ribosomal protein S6 n=1 Tax=Afipia birgiae RepID=UPI0002D6F932
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_expt_1000_bf_scaffold_3015_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11257..11496
DNA (240bp) protein (80aa)
30S ribosomal protein S18 n=4 Tax=Bradyrhizobiaceae RepID=RS18_RHOPB
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3015_curated_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11635..12594
DNA (960bp) protein (320aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002F7632E
Uncharacterized protein {ECO:0000313|EMBL:EGP08011.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3015_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12651..13250
DNA (600bp) protein (200aa)
50S ribosomal protein L9 n=1 Tax=Afipia birgiae RepID=UPI000310093B
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_expt_1000_bf_scaffold_3015_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13338..14213)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00035E6D0C
Uncharacterized protein {ECO:0000313|EMBL:EKS42442.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14483..15742
DNA (1260bp) protein (420aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMH5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39583.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3015_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15934..17433
DNA (1500bp) protein (500aa)
dnaB; replicative DNA helicase DnaB (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12]
Replicative DNA helicase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAE1_9BRAD
Replicative DNA helicase {ECO:0000313|EMBL:EKS39582.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3015_curated_18
unknown

Not on your lists

comp(17472..18347)
DNA (876bp) protein (292aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3015_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18685..19443
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003139438
Uncharacterized protein {ECO:0000313|EMBL:EKS42435.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19571..19945)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030BA837
Uncharacterized protein {ECO:0000313|EMBL:EKS39579.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NHL repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_3015_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20906..22348
DNA (1443bp) protein (481aa)
DNA repair protein RadA n=1 Tax=Afipia birgiae RepID=UPI0002E46D24
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
SCNpilot_expt_1000_bf_scaffold_3015_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22595..23239
DNA (645bp) protein (215aa)
colicin V synthesis protein n=1 Tax=Afipia birgiae RepID=UPI0002F2D222
Uncharacterized protein {ECO:0000313|EMBL:EKS39577.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cvpA; CvpA family protein; K03558 membrane protein required for colicin V production
SCNpilot_expt_1000_bf_scaffold_3015_curated_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23274..24803
DNA (1530bp) protein (510aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacteri
purF; amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
Amidophosphoribosyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLZ3_9BRAD
SCNpilot_expt_1000_bf_scaffold_3015_curated_24
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24816..25451)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLH0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42431.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
type 12 methyltransferase
SCNpilot_expt_1000_bf_scaffold_3015_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25465..25941)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ62_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39575.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_3015_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26171..26917
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFP0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39574.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_3015_curated_27
unknown

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26992..27555
DNA (564bp) protein (188aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3015_curated_28
unknown

Not on your lists

comp(27524..27736)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3015_curated_29
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28757..29254)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003698B0E
Uncharacterized protein {ECO:0000313|EMBL:EJZ34522.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_curated_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29411..31042)
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDD1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39571.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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