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SCNpilot_expt_1000_bf_scaffold_2579_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2579_curated_1
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..536)
DNA (534bp) protein (178aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Rhizobium sp. CF080 RepID=J2K628_9RHIZ
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EUB95794.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ntrX; two-component response regulator nitrogen regulation protein; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
SCNpilot_expt_1000_bf_scaffold_2579_curated_2
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(508..1350)
DNA (843bp) protein (281aa)
Nitrogen assimilation regulatory protein n=1 Tax=Rhizobium sp. RepID=L0NE21_RHISP
ATPase AAA {ECO:0000313|EMBL:KEQ03985.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
ntrX; nitrogen regulation (two-component response regulator) protein; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
SCNpilot_expt_1000_bf_scaffold_2579_curated_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1351..3603)
DNA (2253bp) protein (751aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ntrY; nitrogen regulation (two-component sensor histidine kinase) protein; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
PAS domain S-box n=1 Tax=Rhizobium sp. AP16 RepID=J2LBI0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2579_curated_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3830..5281)
DNA (1452bp) protein (484aa)
Nitrogen regulation protein NtrC n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIS1_RHITR
ntrC; nitrogen regulation protein NtrC
Nitrogen regulation protein NtrC {ECO:0000313|EMBL:AGB71122.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2579_curated_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5278..6078)
DNA (801bp) protein (267aa)
ntrB; nitrogen regulation (two-component sensor histidine kinase) protein; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
Nitrogen regulation (Two-component sensor histidine kinase) protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I004_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2579_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6130..6420)
DNA (291bp) protein (97aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
ntrB; nitrogen regulation (two-component sensor histidine kinase) protein; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Signal transduction histidine kinase, nitrogen specific n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0GYN7_RHILT
SCNpilot_expt_1000_bf_scaffold_2579_curated_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6417..7436)
DNA (1020bp) protein (340aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. CF142 RepID=J1T586_9RHIZ
nifR; tRNA-dihydrouridine synthase
SCNpilot_expt_1000_bf_scaffold_2579_curated_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7584..8783
DNA (1200bp) protein (400aa)
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V7S2_9RHIZ
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_2579_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8780..9277
DNA (498bp) protein (166aa)
Competence/damage-inducible protein CinA n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CJ26_AGRT5
cinA; competence/damage-inducible protein CinA; K03743
Putative competence-damage inducible protein {ECO:0000313|EMBL:KJX88635.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_2579_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9328..9777)
DNA (450bp) protein (150aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG55_9RHIZ
Cyclase/dehydrase START-like domain-containing protein {ECO:0000313|EMBL:AJC79202.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
oligoketide cyclase/dehydrase
SCNpilot_expt_1000_bf_scaffold_2579_curated_11
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9787..10356)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036DE74C
DNA topology modulation kinase FlaR-like protein {ECO:0000313|EMBL:EPE98561.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
DNA topology modulation kinase FlaR-like protein
SCNpilot_expt_1000_bf_scaffold_2579_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10428..11399)
DNA (972bp) protein (324aa)
lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
radical SAM protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000369306B
SCNpilot_expt_1000_bf_scaffold_2579_curated_13
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11439..11687)
DNA (249bp) protein (83aa)
Uncharacterized protein n=2 Tax=Rhizobium RepID=K5CVQ9_RHILU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIV69270.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
SCNpilot_expt_1000_bf_scaffold_2579_curated_14
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11702..11962)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3II52_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE98558.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
transglycosylase-associated protein
SCNpilot_expt_1000_bf_scaffold_2579_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12018..13463)
DNA (1446bp) protein (482aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lpdA; dihydrolipoyl dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase LpdA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW74_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2579_curated_16
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13487..14062)
DNA (576bp) protein (192aa)
acetyltransferase n=1 Tax=Rhizobium meliloti RepID=UPI00035F3B5C
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABR59932.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2579_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14065..14706)
DNA (642bp) protein (214aa)
Arylesterase {ECO:0000313|EMBL:EYR80043.1}; EC=3.1.1.2 {ECO:0000313|EMBL:EYR80043.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Arylesterase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXC0_9RHIZ
esterase
SCNpilot_expt_1000_bf_scaffold_2579_curated_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14729..16084)
DNA (1356bp) protein (452aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W0H3_RHILT
SCNpilot_expt_1000_bf_scaffold_2579_curated_19
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16100..17497)
DNA (1398bp) protein (466aa)
transketolase; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component, beta subunit n=1 Tax=Rhizobium sp. RepID=L0NE06_RHISP
Pyruvate dehydrogenase E1 component subunit BetA {ECO:0000313|EMBL:CDN47771.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_2579_curated_20
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17519..18565)
DNA (1047bp) protein (349aa)
pdhA; pyruvate dehydrogenase E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
pyruvate dehydrogenase E1 subunit alpha n=1 Tax=Rhizobium giardinii RepID=UPI0003765B83
SCNpilot_expt_1000_bf_scaffold_2579_curated_21
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18717..19034)
DNA (318bp) protein (106aa)
Septum formation initiator n=1 Tax=Rhizobium sp. CF080 RepID=J2J3F6_9RHIZ
Septum formation initiator {ECO:0000313|EMBL:EUB95813.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
septum formation initiator
SCNpilot_expt_1000_bf_scaffold_2579_curated_22
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19195..20469)
DNA (1275bp) protein (425aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
eno; Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) (EC:4.2.1.11)
Enolase n=1 Tax=Rhizobium sp. RepID=L0NE45_RHISP
SCNpilot_expt_1000_bf_scaffold_2579_curated_23
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20558..21406)
DNA (849bp) protein (283aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; R
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PNV3_9RHIZ
kdsA; 3-deoxy-8-phosphooctulonate synthase
SCNpilot_expt_1000_bf_scaffold_2579_curated_24
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21624..22163)
DNA (540bp) protein (180aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
alanyl-tRNA synthetase n=1 Tax=Rhizobium leguminosarum RepID=UPI000364F3A6
SCNpilot_expt_1000_bf_scaffold_2579_curated_25
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22290..24320
DNA (2031bp) protein (677aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0V7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGY00849.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2579_curated_26
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24437..24700)
DNA (264bp) protein (88aa)
Protein RecA n=27 Tax=Rhizobium RepID=RECA_RHIEC
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
recA; recombinase A; K03553 recombination protein RecA
Displaying 26 items

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